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How to use cleanup_sequence method in molecule

Best Python code snippet using molecule_python

sequences_runner.py

Source:sequences_runner.py

...35    def run(self, sequence_id):36        if not self.controller.indi_server.is_connected():37            raise BadRequestError('INDI server not connected.')38        sequence = self.controller.sequences.lookup(sequence_id)39        def cleanup_sequence(_):40            del self.running_sequences[sequence_id]41        running_sequence = RunningSequence(sequence, self.controller, self.logger, on_finished=cleanup_sequence)42        self.running_sequences[sequence_id] = running_sequence43    def get(self, sequence_id):44        return self.running_sequences.get(sequence_id)45    def is_running(self, sequence_id):...

check_if_dna.py

Source:check_if_dna.py

...15        TypeError: If the type is not right, it will output an ERROR message with solution16    """17    try:18        if var_is_string(check_if_dna):19            check_if_dna = cleanup_sequence(check_if_dna)20            p = re.compile('[atgcATGC]+')21            is_valid_dna = p.fullmatch(check_if_dna)22            if is_valid_dna:23                return True24            else:25                return False26        else:27            raise TypeError28    except TypeError:29        print("WARNING: An ERROR has occured!")30        print("ERROR: INPUT in isvaliddna is not right type")...

cleanup_sequence.py

Source:cleanup_sequence.py

1""" cleanup_sequence.py2"""3import re4def cleanup_sequence(sequence):5    """6    Function to cleanup the sequence7    Args:8       sequence: The variable to clear from whitespaces.9    Returns:10       cl_seq: The clean variable11    """12    cl_seq = ""13    for item in re.findall('\S', sequence):14        cl_seq = cl_seq + item...

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