Best Python code snippet using molecule_python
sequences_runner.py
Source: sequences_runner.py
...35 def run(self, sequence_id):36 if not self.controller.indi_server.is_connected():37 raise BadRequestError('INDI server not connected.')38 sequence = self.controller.sequences.lookup(sequence_id)39 def cleanup_sequence(_):40 del self.running_sequences[sequence_id]41 running_sequence = RunningSequence(sequence, self.controller, self.logger, on_finished=cleanup_sequence)42 self.running_sequences[sequence_id] = running_sequence43 def get(self, sequence_id):44 return self.running_sequences.get(sequence_id)45 def is_running(self, sequence_id):...
check_if_dna.py
Source: check_if_dna.py
...15 TypeError: If the type is not right, it will output an ERROR message with solution16 """17 try:18 if var_is_string(check_if_dna):19 check_if_dna = cleanup_sequence(check_if_dna)20 p = re.compile('[atgcATGC]+')21 is_valid_dna = p.fullmatch(check_if_dna)22 if is_valid_dna:23 return True24 else:25 return False26 else:27 raise TypeError28 except TypeError:29 print("WARNING: An ERROR has occured!")30 print("ERROR: INPUT in isvaliddna is not right type")...
cleanup_sequence.py
Source: cleanup_sequence.py
1""" cleanup_sequence.py2"""3import re4def cleanup_sequence(sequence):5 """6 Function to cleanup the sequence7 Args:8 sequence: The variable to clear from whitespaces.9 Returns:10 cl_seq: The clean variable11 """12 cl_seq = ""13 for item in re.findall('\S', sequence):14 cl_seq = cl_seq + item...
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