Best Python code snippet using localstack_python
library.py
Source: library.py
...14from core.settings import settings15from core.settings.settings import control16from core.tasks import app17UPDATE_FREQUENCY = 0.518def get_library_path() -> str:19 """Returns the absolute path of the local library."""20 return os.path.abspath(os.path.join(conf.SONGS_CACHE_DIR, "local_library"))21@control22def list_subdirectories(request: WSGIRequest) -> HttpResponse:23 """Returns a list of all subdirectories for the given path."""24 path = request.GET.get("path")25 if path is None:26 return HttpResponseBadRequest("path was not supplied.")27 basedir, subdirpart = os.path.split(path)28 if path == "":29 suggestions = ["/"]30 elif os.path.isdir(basedir):31 suggestions = [32 os.path.join(basedir, subdir + "/")...
base.py
Source: base.py
1#!/usr/bin/env python2# vim:fileencoding=UTF-8:ts=4:sw=4:sta:et:sts=4:ai3from __future__ import (unicode_literals, division, absolute_import,4 print_function)5__license__ = 'GPL v3'6__copyright__ = '2011, Kovid Goyal <kovid@kovidgoyal.net>'7__docformat__ = 'restructuredtext en'8import unittest, os, shutil, tempfile, atexit, gc9from functools import partial10from io import BytesIO11from future_builtins import map12rmtree = partial(shutil.rmtree, ignore_errors=True)13class BaseTest(unittest.TestCase):14 longMessage = True15 maxDiff = None16 def setUp(self):17 self.library_path = self.mkdtemp()18 self.create_db(self.library_path)19 def tearDown(self):20 gc.collect(), gc.collect()21 shutil.rmtree(self.library_path)22 def create_db(self, library_path):23 from calibre.library.database2 import LibraryDatabase224 if LibraryDatabase2.exists_at(library_path):25 raise ValueError('A library already exists at %r'%library_path)26 src = os.path.join(os.path.dirname(__file__), 'metadata.db')27 dest = os.path.join(library_path, 'metadata.db')28 shutil.copyfile(src, dest)29 db = LibraryDatabase2(library_path)30 db.set_cover(1, I('lt.png', data=True))31 db.set_cover(2, I('polish.png', data=True))32 db.add_format(1, 'FMT1', BytesIO(b'book1fmt1'), index_is_id=True)33 db.add_format(1, 'FMT2', BytesIO(b'book1fmt2'), index_is_id=True)34 db.add_format(2, 'FMT1', BytesIO(b'book2fmt1'), index_is_id=True)35 db.conn.close()36 return dest37 def init_cache(self, library_path=None):38 from calibre.db.backend import DB39 from calibre.db.cache import Cache40 backend = DB(library_path or self.library_path)41 cache = Cache(backend)42 cache.init()43 return cache44 def mkdtemp(self):45 ans = tempfile.mkdtemp(prefix='db_test_')46 atexit.register(rmtree, ans)47 return ans48 def init_old(self, library_path=None):49 from calibre.library.database2 import LibraryDatabase250 return LibraryDatabase2(library_path or self.library_path)51 def init_legacy(self, library_path=None):52 from calibre.db.legacy import LibraryDatabase53 return LibraryDatabase(library_path or self.library_path)54 def clone_library(self, library_path):55 if not hasattr(self, 'clone_dir'):56 self.clone_dir = tempfile.mkdtemp()57 atexit.register(rmtree, self.clone_dir)58 self.clone_count = 059 self.clone_count += 160 dest = os.path.join(self.clone_dir, str(self.clone_count))61 shutil.copytree(library_path, dest)62 return dest63 @property64 def cloned_library(self):65 return self.clone_library(self.library_path)66 def compare_metadata(self, mi1, mi2):67 allfk1 = mi1.all_field_keys()68 allfk2 = mi2.all_field_keys()69 self.assertEqual(allfk1, allfk2)70 all_keys = {'format_metadata', 'id', 'application_id',71 'author_sort_map', 'author_link_map', 'book_size',72 'ondevice_col', 'last_modified', 'has_cover',73 'cover_data'}.union(allfk1)74 for attr in all_keys:75 if attr == 'user_metadata':76 continue77 attr1, attr2 = getattr(mi1, attr), getattr(mi2, attr)78 if attr == 'formats':79 attr1, attr2 = map(lambda x:tuple(x) if x else (), (attr1, attr2))80 if isinstance(attr1, (tuple, list)) and 'authors' not in attr and 'languages' not in attr:81 attr1, attr2 = set(attr1), set(attr2)82 self.assertEqual(attr1, attr2,83 '%s not the same: %r != %r'%(attr, attr1, attr2))84 if attr.startswith('#'):85 attr1, attr2 = mi1.get_extra(attr), mi2.get_extra(attr)86 self.assertEqual(attr1, attr2,...
_library_paths.py
Source: _library_paths.py
1from __future__ import annotations2import os3from dataclasses import dataclass4from threading import Lock5from ._config import AppConfig6class _LibraryMeta(type):7 _instances = {}8 _lock: Lock = Lock()9 def __call__(cls, grch: str = "hg38") -> _LibraryPaths:10 with cls._lock:11 if cls not in cls._instances:12 if grch == "hg38":13 instance = _LibraryPaths3814 else:15 instance = _LibraryPaths1916 cls._instances[cls] = instance.__call__()17 return cls._instances[cls]18@dataclass19class _LibraryPaths:20 # PICARD: str = os.path.join(AppConfig.LIBRARY_PATH, "picard.jar")21 # GATK: str = os.path.join(AppConfig.LIBRARY_PATH, "GenomeAnalysisTK.jar")22 # GATK4: str = os.path.join(AppConfig.LIBRARY_PATH, "gatk-4.1.0.0", "gatk")23 # VARSCAN: str = os.path.join(AppConfig.LIBRARY_PATH, "VarScan.v2.3.9.jar")24 # FASTQC: str = os.path.join(AppConfig.LIBRARY_PATH, "FastQC", "fastqc")25 # FASTP: str = os.path.join(AppConfig.LIBRARY_PATH, "fastp", "fastp")26 # STRELKA: str = os.path.join(27 # AppConfig.LIBRARY_PATH,28 # "strelka-2.9.10.centos6_x86_64",29 # "bin",30 # "configureStrelkaSomaticWorkflow.py",31 # )32 # SOMATICSNIPER: str = os.path.join(33 # AppConfig.LIBRARY_PATH, "somatic-sniper", "build", "bin", "bam-somaticsniper"34 # )35@dataclass36class _LibraryPaths38(_LibraryPaths):37 REF_DIR: str = os.path.join(38 AppConfig.LIBRARY_PATH, "ref_genome_indexes", "hg38_bundle"39 )40 DBSNP: str = os.path.join(41 AppConfig.LIBRARY_PATH,42 "ref_genome_indexes",43 "hg38_bundle",44 "dbsnp_146.hg38.vcf.gz",45 )46 MILLS_INDEL: str = os.path.join(47 AppConfig.LIBRARY_PATH,48 "ref_genome_indexes",49 "hg38_bundle",50 "Mills_and_1000G_gold_standard.indels.hg38.vcf.gz",51 )52 COSMIC: str = os.path.join(53 AppConfig.LIBRARY_PATH,54 "ref_genome_indexes",55 "hg19_bundle",56 "cosmic_hg19_lifted_over.vcf",57 )58 ANNOVAR: str = os.path.join(AppConfig.LIBRARY_PATH, "annovar")59 ANNOVAR_DB: str = os.path.join(AppConfig.LIBRARY_PATH, "annovar", "humandb_38")60 ONE_THOUSAND_G: str = os.path.join(61 AppConfig.LIBRARY_PATH,62 "ref_genome_indexes",63 "hg38_bundle",64 "1000G_phase1.snps.high_confidence.hg38.vcf.gz",65 )66@dataclass67class _LibraryPaths19(_LibraryPaths):68 REF_DIR: str = os.path.join(69 AppConfig.LIBRARY_PATH, "ref_genome_indexes", "hg19_bundle"70 )71 DBSNP: str = os.path.join(72 AppConfig.LIBRARY_PATH,73 "ref_genome_indexes",74 "hg19_bundle",75 "dbsnp_138.hg19.vcf.gz",76 )77 MILLS_INDEL: str = os.path.join(78 AppConfig.LIBRARY_PATH,79 "ref_genome_indexes",80 "hg19_bundle",81 "Mills_and_1000G_gold_standard.indels.hg19.sites.vcf.gz",82 )83 COSMIC: str = os.path.join(84 AppConfig.LIBRARY_PATH,85 "ref_genome_indexes",86 "hg19_bundle",87 "cosmic_hg19_lifted_over.vcf",88 )89 ANNOVAR: str = os.path.join(AppConfig.LIBRARY_PATH, "annovar")90 ANNOVAR_DB: str = os.path.join(AppConfig.LIBRARY_PATH, "annovar", "humandb")91 ONE_THOUSAND_G: str = os.path.join(92 AppConfig.LIBRARY_PATH,93 "ref_genome_indexes",94 "hg19_bundle",95 "1000G_phase1.snps.high_confidence.hg19.sites.vcf.gz",96 )97@dataclass98class LibraryPaths(metaclass=_LibraryMeta):99 """100 Only this class is imported from outside101 Metaclass will automatically create the correct instance...
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