Best Testng code snippet using org.testng.TestNG.getStart
Source: IsoformTest.java
...66 SAMRecord read = createRead("chr1", 1001, "50M");67 68 List<Coordinate> coords = iso1.match(read);69 assertEquals(coords.size(), 1);70 assertEquals(coords.get(0).getStart(), 1);71 assertEquals(coords.get(0).getStop(), 50);72 }73 74 @Test (groups = "unit")75 public void testMatch_endOfIsoform() {76 SAMRecord read = createRead("chr1", 1951, "50M");77 78 List<Coordinate> coords = iso1.match(read);79 assertEquals(coords.size(), 1);80 assertEquals(coords.get(0).getStart(), 551);81 assertEquals(coords.get(0).getStop(), 600);82 }83 84 @Test (groups = "unit")85 public void testMatch_middleExon() {86 SAMRecord read = createRead("chr1", 1600, "50M");87 88 List<Coordinate> coords = iso1.match(read);89 assertEquals(coords.size(), 1);90 assertEquals(coords.get(0).getStart(), 400);91 assertEquals(coords.get(0).getStop(), 449);92 }93 94 @Test (groups = "unit")95 public void testMatch_readSkipsFirstIntron() { 96 SAMRecord read = createRead("chr1", 1291, "10M200N40M");97 98 List<Coordinate> coords = iso1.match(read);99 assertEquals(coords.size(), 2);100 assertEquals(coords.get(0).getStart(), 291);101 assertEquals(coords.get(0).getStop(), 300);102 assertEquals(coords.get(1).getStart(), 301);103 assertEquals(coords.get(1).getStop(), 340);104 }105 106 @Test (groups = "unit")107 public void testMatch_readSkipsSecondIntron() {108 SAMRecord read = createRead("chr1", 1700, "1M200N49M");109 110 List<Coordinate> coords = iso1.match(read);111 assertEquals(coords.size(), 2);112 assertEquals(coords.get(0).getStart(), 500);113 assertEquals(coords.get(0).getStop(), 500);114 assertEquals(coords.get(1).getStart(), 501);115 assertEquals(coords.get(1).getStop(), 549);116 }117 118 @Test (groups = "unit")119 public void testMatch_readSpansMultipleIntrons() {120 SAMRecord read = createRead("chr1", 1291, "10M200N200M200N15M");121 122 List<Coordinate> coords = iso1.match(read);123 assertEquals(coords.size(), 3);124 assertEquals(coords.get(0).getStart(), 291);125 assertEquals(coords.get(0).getStop(), 300);126 assertEquals(coords.get(1).getStart(), 301);127 assertEquals(coords.get(1).getStop(), 500);128 assertEquals(coords.get(2).getStart(), 501);129 assertEquals(coords.get(2).getStop(), 515);130 }131 132 @Test (groups = "unit")133 public void testMatch_insert() {134 SAMRecord read = createRead("chr1", 1001, "33M1I16M");135 136 List<Coordinate> coords = iso1.match(read);137 assertEquals(coords.size(), 2);138 assertEquals(coords.get(0).getStart(), 1);139 assertEquals(coords.get(0).getStop(), 33);140 assertEquals(coords.get(1).getStart(), 34);141 assertEquals(coords.get(1).getStop(), 49);142 }143 144 @Test (groups = "unit")145 public void testMatch_insertReadAtEndEdgeOfExon() {146 SAMRecord read = createRead("chr1", 1652, "33M1I16M");147 148 List<Coordinate> coords = iso1.match(read);149 assertEquals(coords.size(), 2);150 assertEquals(coords.get(0).getStart(), 452);151 assertEquals(coords.get(0).getStop(), 484);152 assertEquals(coords.get(1).getStart(), 485);153 assertEquals(coords.get(1).getStop(), 500);154 }155 156 @Test (groups = "unit")157 public void testMatch_delete() {158 SAMRecord read = createRead("chr1", 1001, "49M2D1M");159 160 List<Coordinate> coords = iso1.match(read);161 assertEquals(coords.size(), 2);162 assertEquals(coords.get(0).getStart(), 1);163 assertEquals(coords.get(0).getStop(), 49);164 assertEquals(coords.get(1).getStart(), 52);165 assertEquals(coords.get(1).getStop(), 52);166 }167 168 @Test (groups = "unit")169 public void testMatch_deleteMovesReadIntoIntron() { 170 SAMRecord read = createRead("chr1", 1250, "49M2D1M");171 172 List<Coordinate> coords = iso1.match(read);173 assertTrue(coords.isEmpty());174 }175 176 @Test (groups = "unit")177 public void testMatch_deleteReadAtEndEdgeOfExon() {178 SAMRecord read = createRead("chr1", 1249, "49M2D1M");179 180 List<Coordinate> coords = iso1.match(read);181 assertEquals(coords.size(), 2);182 assertEquals(coords.get(0).getStart(), 249);183 assertEquals(coords.get(0).getStop(), 297);184 assertEquals(coords.get(1).getStart(), 300);185 assertEquals(coords.get(1).getStop(), 300);186 }187 188 @Test (groups = "unit")189 public void testMatch_readInStartOfFirstIntron() {190 191 SAMRecord read = createRead("chr1", 1291, "11M199N40M");192 193 List<Coordinate> coords = iso1.match(read);194 assertTrue(coords.isEmpty());195 }196 197 @Test (groups = "unit")198 public void testMatch_readInEndOfFirstIntron() {...
Source: BalancedMatchTest.java
...7public class BalancedMatchTest {8 @Test9 public void balanced() {10 BalancedMatch result = BalancedMatch.balanced("{", "}", "pre{in{nest}}post");11 assertEquals(result.getStart(), 3);12 assertEquals(result.getEnd(), 12);13 assertEquals(result.getPre(), "pre");14 assertEquals(result.getBody(), "in{nest}");15 assertEquals(result.getPost(), "post");16 result = BalancedMatch.balanced("{", "}", "{{{{{{{{{in}post");17 assertEquals(result.getStart(), 8);18 assertEquals(result.getEnd(), 11);19 assertEquals(result.getPre(), "{{{{{{{{");20 assertEquals(result.getBody(), "in");21 assertEquals(result.getPost(), "post");22 result = BalancedMatch.balanced("{", "}", "pre{body{in}post");23 assertEquals(result.getStart(), 8);24 assertEquals(result.getEnd(), 11);25 assertEquals(result.getPre(), "pre{body");26 assertEquals(result.getBody(), "in");27 assertEquals(result.getPost(), "post");28 result = BalancedMatch.balanced("{", "}", "pre{in}po}st");29 assertEquals(result.getStart(), 3);30 assertEquals(result.getEnd(), 6);31 assertEquals(result.getPre(), "pre");32 assertEquals(result.getBody(), "in");33 assertEquals(result.getPost(), "po}st");34 result = BalancedMatch.balanced("{", "}", "pre}{in{nest}}post");35 assertEquals(result.getStart(), 4);36 assertEquals(result.getEnd(), 13);37 assertEquals(result.getPre(), "pre}");38 assertEquals(result.getBody(), "in{nest}");39 assertEquals(result.getPost(), "post");40 result = BalancedMatch.balanced("{", "}", "pre{body}between{body2}post");41 assertEquals(result.getStart(), 3);42 assertEquals(result.getEnd(), 8);43 assertEquals(result.getPre(), "pre");44 assertEquals(result.getBody(), "body");45 assertEquals(result.getPost(), "between{body2}post");46 result = BalancedMatch.balanced("<b>", "</b>", "pre<b>in<b>nest</b></b>post");47 assertEquals(result.getStart(), 3);48 assertEquals(result.getEnd(), 19);49 assertEquals(result.getPre(), "pre");50 assertEquals(result.getBody(), "in<b>nest</b>");51 assertEquals(result.getPost(), "post");52 result = BalancedMatch.balanced("<b>", "</b>", "pre</b><b>in<b>nest</b></b>post");53 assertEquals(result.getStart(), 7);54 assertEquals(result.getEnd(), 23);55 assertEquals(result.getPre(), "pre</b>");56 assertEquals(result.getBody(), "in<b>nest</b>");57 assertEquals(result.getPost(), "post");58 result = BalancedMatch.balanced("{{", "}}", "pre{{{in}}}post");59 assertEquals(result.getStart(), 3);60 assertEquals(result.getEnd(), 9);61 assertEquals(result.getPre(), "pre");62 assertEquals(result.getBody(), "{in}");63 assertEquals(result.getPost(), "post");64 result = BalancedMatch.balanced("{{{", "}}", "pre{{{in}}}post");65 assertEquals(result.getStart(), 3);66 assertEquals(result.getEnd(), 8);67 assertEquals(result.getPre(), "pre");68 assertEquals(result.getBody(), "in");69 assertEquals(result.getPost(), "}post");70 result = BalancedMatch.balanced("{", "}", "pre{{first}in{second}post");71 assertEquals(result.getStart(), 4);72 assertEquals(result.getEnd(), 10);73 assertEquals(result.getPre(), "pre{");74 assertEquals(result.getBody(), "first");75 assertEquals(result.getPost(), "in{second}post");76 result = BalancedMatch.balanced("<?", "?>", "pre<?>post");77 assertEquals(result.getStart(), 3);78 assertEquals(result.getEnd(), 4);79 assertEquals(result.getPre(), "pre");80 assertEquals(result.getBody(), "");81 assertEquals(result.getPost(), "post");82 result = BalancedMatch.balanced("___", "___", "PRE ___BODY___ POST");83 assertEquals(result.getStart(), 4);84 assertEquals(result.getEnd(), 11);85 assertEquals(result.getPre(), "PRE ");86 assertEquals(result.getBody(), "BODY");87 assertEquals(result.getPost(), " POST");88 assertNull(BalancedMatch.balanced((Pattern) null, (Pattern) null, "nope"), "should be notOk");89 assertNull(BalancedMatch.balanced((String) null, (String) null, "nope"), "should be notOk");90 assertNull(BalancedMatch.balanced("{", "}", "nope"), "should be notOk");91 assertNull(BalancedMatch.balanced("{", "}", "{nope"), "should be notOk");92 assertNull(BalancedMatch.balanced("{", "}", "nope}"), "should be notOk");93 assertNull(BalancedMatch.balanced(Pattern.compile("\\{"), Pattern.compile("\\}"), "nope"), "should be notOk");94 result = BalancedMatch.balanced(Pattern.compile("\\s+\\{\\s+"), Pattern.compile("\\s+\\}\\s+"),95 "pre { in{nest} } post");96 assertEquals(result.getStart(), 3);97 assertEquals(result.getEnd(), 17);98 assertEquals(result.getPre(), "pre");99 assertEquals(result.getBody(), "in{nest}");100 assertEquals(result.getPost(), "post");101 }102}...
Source: ReadTransformerTest.java
...9public final class ReadTransformerTest {10 static final SAMFileHeader header = ArtificialReadUtils.createArtificialSamHeader();11 12 static final ReadTransformer moveLeft = samrecord -> {13 samrecord.setPosition(samrecord.getContig(), samrecord.getStart() - 1);14 return samrecord;15 };16 static final ReadTransformer moveTo20 = samrecord -> {17 samrecord.setPosition(samrecord.getContig(), 20);18 return samrecord;19 };20 @DataProvider(name = "UnmodifiedReadDataProvider")21 public Object[][] getUnmodifiedReadData() {22 return new Object[][] {23 { ArtificialReadUtils.createArtificialRead(header, "read1", 0, 10, 10) }24 };25 }26 @Test(dataProvider = "UnmodifiedReadDataProvider")27 public void testAndThen( final GATKRead read ) {28 ReadTransformer leftThen20 = moveLeft.andThen(moveTo20);29 leftThen20.apply(read);30 Assert.assertEquals(read.getStart(), 20);31 moveTo20.andThen(moveLeft).apply(read);32 Assert.assertEquals(read.getStart(), 19);33 }34 @Test(dataProvider = "UnmodifiedReadDataProvider")35 public void testCompose( final GATKRead read ) {36 ReadTransformer leftThen20 = moveLeft.compose(moveTo20);37 leftThen20.apply(read);38 Assert.assertEquals(read.getStart(), 19);39 moveTo20.compose(moveLeft).apply(read);40 Assert.assertEquals(read.getStart(), 20);41 }42 @Test(dataProvider = "UnmodifiedReadDataProvider")43 public void testAndChain( final GATKRead read ) {44 moveTo20.andThen(moveLeft)45 .andThen(moveLeft)46 .andThen(moveLeft)47 .andThen(moveLeft)48 .apply(read);49 Assert.assertEquals(read.getStart(), 16);50 }51 @Test(dataProvider = "UnmodifiedReadDataProvider")52 public void testMixedChain( final GATKRead read ) {53 moveLeft.compose(r -> { r.setMappingQuality(42); return r;})54 .compose(moveTo20)55 .andThen(moveLeft)56 .apply(read);57 Assert.assertEquals(read.getMappingQuality(), 42);58 Assert.assertEquals(read.getStart(), 18);59 }60 @Test(dataProvider = "UnmodifiedReadDataProvider")61 public void testIdentity( final GATKRead read ) {62 Assert.assertEquals(ReadTransformer.identity().apply(read), read);63 }64}...
Source: BedParserUnitTest.java
...41 Assert.assertTrue(location.get(1).getContig().equals("20"));42 Assert.assertTrue(location.get(2).getContig().equals("22"));43 Assert.assertTrue(location.get(3).getContig().equals("22"));44 // now check the the start positions45 Assert.assertEquals(location.get(0).getStart(), 1);46 Assert.assertEquals(location.get(1).getStart(), 1002);47 Assert.assertEquals(location.get(2).getStart(), 1001);48 Assert.assertEquals(location.get(3).getStart(), 2001);49 // now check the the stop positions50 Assert.assertEquals(location.get(0).getStop(), 999);51 Assert.assertEquals(location.get(1).getStop(), 2000);52 Assert.assertEquals(location.get(2).getStop(), 5000);53 Assert.assertEquals(location.get(3).getStop(), 6000);54 }55}...
...25 final List<PileupSummary> result = PileupSummary.readPileupSummaries(output);26 // compare to IGV manual inspection27 final PileupSummary ps1 = result.get(0);28 Assert.assertEquals(ps1.getContig(), "20");29 Assert.assertEquals(ps1.getStart(), 10000117);30 Assert.assertEquals(ps1.getRefCount(), 36);31 Assert.assertEquals(ps1.getAltCount(), 28);32 Assert.assertEquals(ps1.getOtherAltCount(), 0);33 Assert.assertEquals(ps1.getAlleleFrequency(), 0.605);34 final PileupSummary ps2 = result.get(1);35 Assert.assertEquals(ps2.getStart(), 10000211);36 Assert.assertEquals(ps2.getRefCount(), 28);37 Assert.assertEquals(ps2.getAltCount(), 28);38 Assert.assertEquals(ps2.getAlleleFrequency(), 0.603);39 final PileupSummary ps3 = result.get(2);40 Assert.assertEquals(ps3.getStart(), 10000439);41 Assert.assertEquals(ps3.getRefCount(), 0);42 Assert.assertEquals(ps3.getAltCount(), 80);43 Assert.assertEquals(ps3.getAlleleFrequency(), 0.81);44 final PileupSummary ps4 = result.get(8);45 Assert.assertEquals(ps4.getStart(), 10001298);46 Assert.assertEquals(ps4.getRefCount(), 0);47 Assert.assertEquals(ps4.getAltCount(), 73);48 Assert.assertEquals(ps4.getOtherAltCount(), 1);49 Assert.assertEquals(ps4.getAlleleFrequency(), 0.809);50 }51}...
Source: NanoSecondTimerTestCase.java
...33 timer = new NanoSecondTimer();34 }35 36 @Test37 public void getStart() {38 Assert.assertEquals(timer.getStart(), 0);39 }40 41 @Test42 public void getStop() {43 Assert.assertEquals(timer.getStop(), 0);44 }45 46 @Test(dependsOnMethods = "getStart")47 public void start() {48 timer.start();49 Assert.assertTrue(timer.getStart() < timer.getCurrentTime());50 }51 52 @Test(dependsOnMethods = {"start", "getStop"})53 public void stop() {54 timer.stop();55 Assert.assertTrue(timer.getStop() < timer.getCurrentTime());56 }57 58 @Test(dependsOnMethods = "stop")59 public void getDuration() {60 Assert.assertTrue(timer.getDuration() > 0);61 }62 63 @Test(dependsOnMethods = "getDuration")64 public void reset() {65 timer.reset();66 Assert.assertEquals(timer.getStart(), 0);67 Assert.assertEquals(timer.getStop(), 0);68 Assert.assertEquals(timer.getDuration(), 0);69 }70}
...
Source: FindUnsortedSubsequenceTest.java
...10 @Test11 public void simpleTest() {12 int[] s = {1, 2, 4, 7, 10, 11, 7, 12, 6, 7, 16, 18, 19};13 FindUnsortedSubsequence.Result result = FindUnsortedSubsequence.find(s);14 Assert.assertTrue(result.getStart() == 3, "Start was: " + result.getStart());15 Assert.assertTrue(result.getEnd() == 9, "End was: " + result.getEnd());16 }17 @Test18 public void simpleTestTwo() {19 int[] s = {1, 2, 4, 4, 5, 9, 1, 3, 6, 11, 15};20 FindUnsortedSubsequence.Result result = FindUnsortedSubsequence.find(s);21 Assert.assertTrue(result.getStart() == 1, "Start was: " + result.getStart());22 Assert.assertTrue(result.getEnd() == 8, "End was: " + result.getEnd());23 }24 @Test25 public void simpleTestThree() {26 int[] s = {5, 4, 3, 2, 11, 12, 13, 14, 15};27 FindUnsortedSubsequence.Result result = FindUnsortedSubsequence.find(s);28 Assert.assertTrue(result.getStart() == 0, "Start was: " + result.getStart());29 Assert.assertTrue(result.getEnd() == 3, "End was: " + result.getEnd());30 }31 @Test32 public void simpleTestFour() {33 int[] s = {1, 2, 3, 4, 5, 11, 15, 13, 12};34 FindUnsortedSubsequence.Result result = FindUnsortedSubsequence.find(s);35 Assert.assertTrue(result.getStart() == 6, "Start was: " + result.getStart());36 Assert.assertTrue(result.getEnd() == 8, "End was: " + result.getEnd());37 }38}...
Source: RangeTupleTest.java
...6 @Test7 public void test() {8 RangeTuple<String> tuple = new RangeTuple<>("startValue", "endValue");9 10 assertEquals(tuple.getStart(), "startValue");11 assertEquals(tuple.getEnd(), "endValue");12 }13 14 @Test15 public void testNull() {16 RangeTuple<String> tuple = new RangeTuple<>(null, null);17 18 assertNull(tuple.getStart());19 assertNull(tuple.getEnd());20 }21}...
getStart
Using AI Code Generation
1import org.testng.TestNG;2public class TestNGRunner {3 public static void main(String[] args) {4 TestNG testNG = new TestNG();5 testNG.setTestClasses(new Class[] {TestNGTest.class});6 testNG.run();7 }8}9import org.testng.annotations.Test;10public class TestNGTest {11 public void test() {12 System.out.println("TestNG is running!");13 }14}
getStart
Using AI Code Generation
1TestNG testng = new TestNG();2testng.setTestSuites(Arrays.asList("testng.xml"));3testng.setUseDefaultListeners(false);4testng.setVerbose(0);5testng.setGroups("group1");6testng.run();7TestNGCommandLineArgs testng = new TestNGCommandLineArgs(new String[] {"-xmlpath", "testng.xml", "-groups", "group1"});8testng.run();9TestNGCommandLineArgs testng = new TestNGCommandLineArgs(new String[] {"-xmlpath", "testng.xml", "-groups", "group1"});10testng.run();
getStart
Using AI Code Generation
1TestNG testng = new TestNG();2testng.setTestSuites(Arrays.asList("C:\\Users\\testng1.xml","C:\\Users\\testng2.xml"));3testng.run();4TestNG testng = new TestNG();5testng.setTestSuites(Arrays.asList("C:\\Users\\testng1.xml","C:\\Users\\testng2.xml"));6testng.run();7TestNG testng = new TestNG();8testng.setTestSuites(Arrays.asList("C:\\Users\\testng1.xml","C:\\Users\\testng2.xml"));9testng.run();10TestNG testng = new TestNG();11testng.setTestSuites(Arrays.asList("C:\\Users
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You can use reflection technique to find out the matching methods in the supplied class like:
public int TotalTescase(String pattern, Class<?> testNGclass) throws ClassNotFoundException
{
int count = 0;
testNGclass.getClass();
Class<?> className = Class.forName(testNGclass.getName());
Method[] methods = className.getMethods();
for(int i=0; i<methods.length; i++)
{
String methodName = methods[i].getName();
System.out.println("Method Name: "+methodName);
if(methodName.contains(pattern))
{
count++;
}
}
return count;
}
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