Best Testng code snippet using org.testng.TestNG.getStart
Source:IsoformTest.java
...66 SAMRecord read = createRead("chr1", 1001, "50M");67 68 List<Coordinate> coords = iso1.match(read);69 assertEquals(coords.size(), 1);70 assertEquals(coords.get(0).getStart(), 1);71 assertEquals(coords.get(0).getStop(), 50);72 }73 74 @Test (groups = "unit")75 public void testMatch_endOfIsoform() {76 SAMRecord read = createRead("chr1", 1951, "50M");77 78 List<Coordinate> coords = iso1.match(read);79 assertEquals(coords.size(), 1);80 assertEquals(coords.get(0).getStart(), 551);81 assertEquals(coords.get(0).getStop(), 600);82 }83 84 @Test (groups = "unit")85 public void testMatch_middleExon() {86 SAMRecord read = createRead("chr1", 1600, "50M");87 88 List<Coordinate> coords = iso1.match(read);89 assertEquals(coords.size(), 1);90 assertEquals(coords.get(0).getStart(), 400);91 assertEquals(coords.get(0).getStop(), 449);92 }93 94 @Test (groups = "unit")95 public void testMatch_readSkipsFirstIntron() { 96 SAMRecord read = createRead("chr1", 1291, "10M200N40M");97 98 List<Coordinate> coords = iso1.match(read);99 assertEquals(coords.size(), 2);100 assertEquals(coords.get(0).getStart(), 291);101 assertEquals(coords.get(0).getStop(), 300);102 assertEquals(coords.get(1).getStart(), 301);103 assertEquals(coords.get(1).getStop(), 340);104 }105 106 @Test (groups = "unit")107 public void testMatch_readSkipsSecondIntron() {108 SAMRecord read = createRead("chr1", 1700, "1M200N49M");109 110 List<Coordinate> coords = iso1.match(read);111 assertEquals(coords.size(), 2);112 assertEquals(coords.get(0).getStart(), 500);113 assertEquals(coords.get(0).getStop(), 500);114 assertEquals(coords.get(1).getStart(), 501);115 assertEquals(coords.get(1).getStop(), 549);116 }117 118 @Test (groups = "unit")119 public void testMatch_readSpansMultipleIntrons() {120 SAMRecord read = createRead("chr1", 1291, "10M200N200M200N15M");121 122 List<Coordinate> coords = iso1.match(read);123 assertEquals(coords.size(), 3);124 assertEquals(coords.get(0).getStart(), 291);125 assertEquals(coords.get(0).getStop(), 300);126 assertEquals(coords.get(1).getStart(), 301);127 assertEquals(coords.get(1).getStop(), 500);128 assertEquals(coords.get(2).getStart(), 501);129 assertEquals(coords.get(2).getStop(), 515);130 }131 132 @Test (groups = "unit")133 public void testMatch_insert() {134 SAMRecord read = createRead("chr1", 1001, "33M1I16M");135 136 List<Coordinate> coords = iso1.match(read);137 assertEquals(coords.size(), 2);138 assertEquals(coords.get(0).getStart(), 1);139 assertEquals(coords.get(0).getStop(), 33);140 assertEquals(coords.get(1).getStart(), 34);141 assertEquals(coords.get(1).getStop(), 49);142 }143 144 @Test (groups = "unit")145 public void testMatch_insertReadAtEndEdgeOfExon() {146 SAMRecord read = createRead("chr1", 1652, "33M1I16M");147 148 List<Coordinate> coords = iso1.match(read);149 assertEquals(coords.size(), 2);150 assertEquals(coords.get(0).getStart(), 452);151 assertEquals(coords.get(0).getStop(), 484);152 assertEquals(coords.get(1).getStart(), 485);153 assertEquals(coords.get(1).getStop(), 500);154 }155 156 @Test (groups = "unit")157 public void testMatch_delete() {158 SAMRecord read = createRead("chr1", 1001, "49M2D1M");159 160 List<Coordinate> coords = iso1.match(read);161 assertEquals(coords.size(), 2);162 assertEquals(coords.get(0).getStart(), 1);163 assertEquals(coords.get(0).getStop(), 49);164 assertEquals(coords.get(1).getStart(), 52);165 assertEquals(coords.get(1).getStop(), 52);166 }167 168 @Test (groups = "unit")169 public void testMatch_deleteMovesReadIntoIntron() { 170 SAMRecord read = createRead("chr1", 1250, "49M2D1M");171 172 List<Coordinate> coords = iso1.match(read);173 assertTrue(coords.isEmpty());174 }175 176 @Test (groups = "unit")177 public void testMatch_deleteReadAtEndEdgeOfExon() {178 SAMRecord read = createRead("chr1", 1249, "49M2D1M");179 180 List<Coordinate> coords = iso1.match(read);181 assertEquals(coords.size(), 2);182 assertEquals(coords.get(0).getStart(), 249);183 assertEquals(coords.get(0).getStop(), 297);184 assertEquals(coords.get(1).getStart(), 300);185 assertEquals(coords.get(1).getStop(), 300);186 }187 188 @Test (groups = "unit")189 public void testMatch_readInStartOfFirstIntron() {190 191 SAMRecord read = createRead("chr1", 1291, "11M199N40M");192 193 List<Coordinate> coords = iso1.match(read);194 assertTrue(coords.isEmpty());195 }196 197 @Test (groups = "unit")198 public void testMatch_readInEndOfFirstIntron() {...
Source:BalancedMatchTest.java
...7public class BalancedMatchTest {8 @Test9 public void balanced() {10 BalancedMatch result = BalancedMatch.balanced("{", "}", "pre{in{nest}}post");11 assertEquals(result.getStart(), 3);12 assertEquals(result.getEnd(), 12);13 assertEquals(result.getPre(), "pre");14 assertEquals(result.getBody(), "in{nest}");15 assertEquals(result.getPost(), "post");16 result = BalancedMatch.balanced("{", "}", "{{{{{{{{{in}post");17 assertEquals(result.getStart(), 8);18 assertEquals(result.getEnd(), 11);19 assertEquals(result.getPre(), "{{{{{{{{");20 assertEquals(result.getBody(), "in");21 assertEquals(result.getPost(), "post");22 result = BalancedMatch.balanced("{", "}", "pre{body{in}post");23 assertEquals(result.getStart(), 8);24 assertEquals(result.getEnd(), 11);25 assertEquals(result.getPre(), "pre{body");26 assertEquals(result.getBody(), "in");27 assertEquals(result.getPost(), "post");28 result = BalancedMatch.balanced("{", "}", "pre{in}po}st");29 assertEquals(result.getStart(), 3);30 assertEquals(result.getEnd(), 6);31 assertEquals(result.getPre(), "pre");32 assertEquals(result.getBody(), "in");33 assertEquals(result.getPost(), "po}st");34 result = BalancedMatch.balanced("{", "}", "pre}{in{nest}}post");35 assertEquals(result.getStart(), 4);36 assertEquals(result.getEnd(), 13);37 assertEquals(result.getPre(), "pre}");38 assertEquals(result.getBody(), "in{nest}");39 assertEquals(result.getPost(), "post");40 result = BalancedMatch.balanced("{", "}", "pre{body}between{body2}post");41 assertEquals(result.getStart(), 3);42 assertEquals(result.getEnd(), 8);43 assertEquals(result.getPre(), "pre");44 assertEquals(result.getBody(), "body");45 assertEquals(result.getPost(), "between{body2}post");46 result = BalancedMatch.balanced("<b>", "</b>", "pre<b>in<b>nest</b></b>post");47 assertEquals(result.getStart(), 3);48 assertEquals(result.getEnd(), 19);49 assertEquals(result.getPre(), "pre");50 assertEquals(result.getBody(), "in<b>nest</b>");51 assertEquals(result.getPost(), "post");52 result = BalancedMatch.balanced("<b>", "</b>", "pre</b><b>in<b>nest</b></b>post");53 assertEquals(result.getStart(), 7);54 assertEquals(result.getEnd(), 23);55 assertEquals(result.getPre(), "pre</b>");56 assertEquals(result.getBody(), "in<b>nest</b>");57 assertEquals(result.getPost(), "post");58 result = BalancedMatch.balanced("{{", "}}", "pre{{{in}}}post");59 assertEquals(result.getStart(), 3);60 assertEquals(result.getEnd(), 9);61 assertEquals(result.getPre(), "pre");62 assertEquals(result.getBody(), "{in}");63 assertEquals(result.getPost(), "post");64 result = BalancedMatch.balanced("{{{", "}}", "pre{{{in}}}post");65 assertEquals(result.getStart(), 3);66 assertEquals(result.getEnd(), 8);67 assertEquals(result.getPre(), "pre");68 assertEquals(result.getBody(), "in");69 assertEquals(result.getPost(), "}post");70 result = BalancedMatch.balanced("{", "}", "pre{{first}in{second}post");71 assertEquals(result.getStart(), 4);72 assertEquals(result.getEnd(), 10);73 assertEquals(result.getPre(), "pre{");74 assertEquals(result.getBody(), "first");75 assertEquals(result.getPost(), "in{second}post");76 result = BalancedMatch.balanced("<?", "?>", "pre<?>post");77 assertEquals(result.getStart(), 3);78 assertEquals(result.getEnd(), 4);79 assertEquals(result.getPre(), "pre");80 assertEquals(result.getBody(), "");81 assertEquals(result.getPost(), "post");82 result = BalancedMatch.balanced("___", "___", "PRE ___BODY___ POST");83 assertEquals(result.getStart(), 4);84 assertEquals(result.getEnd(), 11);85 assertEquals(result.getPre(), "PRE ");86 assertEquals(result.getBody(), "BODY");87 assertEquals(result.getPost(), " POST");88 assertNull(BalancedMatch.balanced((Pattern) null, (Pattern) null, "nope"), "should be notOk");89 assertNull(BalancedMatch.balanced((String) null, (String) null, "nope"), "should be notOk");90 assertNull(BalancedMatch.balanced("{", "}", "nope"), "should be notOk");91 assertNull(BalancedMatch.balanced("{", "}", "{nope"), "should be notOk");92 assertNull(BalancedMatch.balanced("{", "}", "nope}"), "should be notOk");93 assertNull(BalancedMatch.balanced(Pattern.compile("\\{"), Pattern.compile("\\}"), "nope"), "should be notOk");94 result = BalancedMatch.balanced(Pattern.compile("\\s+\\{\\s+"), Pattern.compile("\\s+\\}\\s+"),95 "pre { in{nest} } post");96 assertEquals(result.getStart(), 3);97 assertEquals(result.getEnd(), 17);98 assertEquals(result.getPre(), "pre");99 assertEquals(result.getBody(), "in{nest}");100 assertEquals(result.getPost(), "post");101 }102}...
Source:ReadTransformerTest.java
...9public final class ReadTransformerTest {10 static final SAMFileHeader header = ArtificialReadUtils.createArtificialSamHeader();11 12 static final ReadTransformer moveLeft = samrecord -> {13 samrecord.setPosition(samrecord.getContig(), samrecord.getStart() - 1);14 return samrecord;15 };16 static final ReadTransformer moveTo20 = samrecord -> {17 samrecord.setPosition(samrecord.getContig(), 20);18 return samrecord;19 };20 @DataProvider(name = "UnmodifiedReadDataProvider")21 public Object[][] getUnmodifiedReadData() {22 return new Object[][] {23 { ArtificialReadUtils.createArtificialRead(header, "read1", 0, 10, 10) }24 };25 }26 @Test(dataProvider = "UnmodifiedReadDataProvider")27 public void testAndThen( final GATKRead read ) {28 ReadTransformer leftThen20 = moveLeft.andThen(moveTo20);29 leftThen20.apply(read);30 Assert.assertEquals(read.getStart(), 20);31 moveTo20.andThen(moveLeft).apply(read);32 Assert.assertEquals(read.getStart(), 19);33 }34 @Test(dataProvider = "UnmodifiedReadDataProvider")35 public void testCompose( final GATKRead read ) {36 ReadTransformer leftThen20 = moveLeft.compose(moveTo20);37 leftThen20.apply(read);38 Assert.assertEquals(read.getStart(), 19);39 moveTo20.compose(moveLeft).apply(read);40 Assert.assertEquals(read.getStart(), 20);41 }42 @Test(dataProvider = "UnmodifiedReadDataProvider")43 public void testAndChain( final GATKRead read ) {44 moveTo20.andThen(moveLeft)45 .andThen(moveLeft)46 .andThen(moveLeft)47 .andThen(moveLeft)48 .apply(read);49 Assert.assertEquals(read.getStart(), 16);50 }51 @Test(dataProvider = "UnmodifiedReadDataProvider")52 public void testMixedChain( final GATKRead read ) {53 moveLeft.compose(r -> { r.setMappingQuality(42); return r;})54 .compose(moveTo20)55 .andThen(moveLeft)56 .apply(read);57 Assert.assertEquals(read.getMappingQuality(), 42);58 Assert.assertEquals(read.getStart(), 18);59 }60 @Test(dataProvider = "UnmodifiedReadDataProvider")61 public void testIdentity( final GATKRead read ) {62 Assert.assertEquals(ReadTransformer.identity().apply(read), read);63 }64}...
Source:BedParserUnitTest.java
...41 Assert.assertTrue(location.get(1).getContig().equals("20"));42 Assert.assertTrue(location.get(2).getContig().equals("22"));43 Assert.assertTrue(location.get(3).getContig().equals("22"));44 // now check the the start positions45 Assert.assertEquals(location.get(0).getStart(), 1);46 Assert.assertEquals(location.get(1).getStart(), 1002);47 Assert.assertEquals(location.get(2).getStart(), 1001);48 Assert.assertEquals(location.get(3).getStart(), 2001);49 // now check the the stop positions50 Assert.assertEquals(location.get(0).getStop(), 999);51 Assert.assertEquals(location.get(1).getStop(), 2000);52 Assert.assertEquals(location.get(2).getStop(), 5000);53 Assert.assertEquals(location.get(3).getStop(), 6000);54 }55}...
Source:GetPileupSummariesIntegrationTest.java
...25 final List<PileupSummary> result = PileupSummary.readPileupSummaries(output);26 // compare to IGV manual inspection27 final PileupSummary ps1 = result.get(0);28 Assert.assertEquals(ps1.getContig(), "20");29 Assert.assertEquals(ps1.getStart(), 10000117);30 Assert.assertEquals(ps1.getRefCount(), 36);31 Assert.assertEquals(ps1.getAltCount(), 28);32 Assert.assertEquals(ps1.getOtherAltCount(), 0);33 Assert.assertEquals(ps1.getAlleleFrequency(), 0.605);34 final PileupSummary ps2 = result.get(1);35 Assert.assertEquals(ps2.getStart(), 10000211);36 Assert.assertEquals(ps2.getRefCount(), 28);37 Assert.assertEquals(ps2.getAltCount(), 28);38 Assert.assertEquals(ps2.getAlleleFrequency(), 0.603);39 final PileupSummary ps3 = result.get(2);40 Assert.assertEquals(ps3.getStart(), 10000439);41 Assert.assertEquals(ps3.getRefCount(), 0);42 Assert.assertEquals(ps3.getAltCount(), 80);43 Assert.assertEquals(ps3.getAlleleFrequency(), 0.81);44 final PileupSummary ps4 = result.get(8);45 Assert.assertEquals(ps4.getStart(), 10001298);46 Assert.assertEquals(ps4.getRefCount(), 0);47 Assert.assertEquals(ps4.getAltCount(), 73);48 Assert.assertEquals(ps4.getOtherAltCount(), 1);49 Assert.assertEquals(ps4.getAlleleFrequency(), 0.809);50 }51}...
Source:NanoSecondTimerTestCase.java
...33 timer = new NanoSecondTimer();34 }35 36 @Test37 public void getStart() {38 Assert.assertEquals(timer.getStart(), 0);39 }40 41 @Test42 public void getStop() {43 Assert.assertEquals(timer.getStop(), 0);44 }45 46 @Test(dependsOnMethods = "getStart")47 public void start() {48 timer.start();49 Assert.assertTrue(timer.getStart() < timer.getCurrentTime());50 }51 52 @Test(dependsOnMethods = {"start", "getStop"})53 public void stop() {54 timer.stop();55 Assert.assertTrue(timer.getStop() < timer.getCurrentTime());56 }57 58 @Test(dependsOnMethods = "stop")59 public void getDuration() {60 Assert.assertTrue(timer.getDuration() > 0);61 }62 63 @Test(dependsOnMethods = "getDuration")64 public void reset() {65 timer.reset();66 Assert.assertEquals(timer.getStart(), 0);67 Assert.assertEquals(timer.getStop(), 0);68 Assert.assertEquals(timer.getDuration(), 0);69 }70}
...
Source:FindUnsortedSubsequenceTest.java
...10 @Test11 public void simpleTest() {12 int[] s = {1, 2, 4, 7, 10, 11, 7, 12, 6, 7, 16, 18, 19};13 FindUnsortedSubsequence.Result result = FindUnsortedSubsequence.find(s);14 Assert.assertTrue(result.getStart() == 3, "Start was: " + result.getStart());15 Assert.assertTrue(result.getEnd() == 9, "End was: " + result.getEnd());16 }17 @Test18 public void simpleTestTwo() {19 int[] s = {1, 2, 4, 4, 5, 9, 1, 3, 6, 11, 15};20 FindUnsortedSubsequence.Result result = FindUnsortedSubsequence.find(s);21 Assert.assertTrue(result.getStart() == 1, "Start was: " + result.getStart());22 Assert.assertTrue(result.getEnd() == 8, "End was: " + result.getEnd());23 }24 @Test25 public void simpleTestThree() {26 int[] s = {5, 4, 3, 2, 11, 12, 13, 14, 15};27 FindUnsortedSubsequence.Result result = FindUnsortedSubsequence.find(s);28 Assert.assertTrue(result.getStart() == 0, "Start was: " + result.getStart());29 Assert.assertTrue(result.getEnd() == 3, "End was: " + result.getEnd());30 }31 @Test32 public void simpleTestFour() {33 int[] s = {1, 2, 3, 4, 5, 11, 15, 13, 12};34 FindUnsortedSubsequence.Result result = FindUnsortedSubsequence.find(s);35 Assert.assertTrue(result.getStart() == 6, "Start was: " + result.getStart());36 Assert.assertTrue(result.getEnd() == 8, "End was: " + result.getEnd());37 }38}...
Source:RangeTupleTest.java
...6 @Test7 public void test() {8 RangeTuple<String> tuple = new RangeTuple<>("startValue", "endValue");9 10 assertEquals(tuple.getStart(), "startValue");11 assertEquals(tuple.getEnd(), "endValue");12 }13 14 @Test15 public void testNull() {16 RangeTuple<String> tuple = new RangeTuple<>(null, null);17 18 assertNull(tuple.getStart());19 assertNull(tuple.getEnd());20 }21}...
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Using AI Code Generation
1import org.testng.TestNG;2public class TestNGRunner {3 public static void main(String[] args) {4 TestNG testNG = new TestNG();5 testNG.setTestClasses(new Class[] {TestNGTest.class});6 testNG.run();7 }8}9import org.testng.annotations.Test;10public class TestNGTest {11 public void test() {12 System.out.println("TestNG is running!");13 }14}
getStart
Using AI Code Generation
1TestNG testng = new TestNG();2testng.setTestSuites(Arrays.asList("testng.xml"));3testng.setUseDefaultListeners(false);4testng.setVerbose(0);5testng.setGroups("group1");6testng.run();7TestNGCommandLineArgs testng = new TestNGCommandLineArgs(new String[] {"-xmlpath", "testng.xml", "-groups", "group1"});8testng.run();9TestNGCommandLineArgs testng = new TestNGCommandLineArgs(new String[] {"-xmlpath", "testng.xml", "-groups", "group1"});10testng.run();
getStart
Using AI Code Generation
1TestNG testng = new TestNG();2testng.setTestSuites(Arrays.asList("C:\\Users\\testng1.xml","C:\\Users\\testng2.xml"));3testng.run();4TestNG testng = new TestNG();5testng.setTestSuites(Arrays.asList("C:\\Users\\testng1.xml","C:\\Users\\testng2.xml"));6testng.run();7TestNG testng = new TestNG();8testng.setTestSuites(Arrays.asList("C:\\Users\\testng1.xml","C:\\Users\\testng2.xml"));9testng.run();10TestNG testng = new TestNG();11testng.setTestSuites(Arrays.asList("C:\\Users
TestNG is a Java-based open-source framework for test automation that includes various test types, such as unit testing, functional testing, E2E testing, etc. TestNG is in many ways similar to JUnit and NUnit. But in contrast to its competitors, its extensive features make it a lot more reliable framework. One of the major reasons for its popularity is its ability to structure tests and improve the scripts' readability and maintainability. Another reason can be the important characteristics like the convenience of using multiple annotations, reliance, and priority that make this framework popular among developers and testers for test design. You can refer to the TestNG tutorial to learn why you should choose the TestNG framework.
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