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How to use verbosity1 method in tox

Best Python code snippet using tox_python

test_abridge_db_for_sqlite.py

Source:test_abridge_db_for_sqlite.py

1from sqlite3 import OperationalError2from tempfile import NamedTemporaryFile3import os4import pytest5import subprocess6from abridger.abridge_db import main7from abridger.database.sqlite import SqliteDatabase8from test.abridge_db_test_utils import TestAbridgeDbBase9class TestAbridgeDbForSqlite(TestAbridgeDbBase):10    def prepare_src(self):11        self.src = NamedTemporaryFile(mode='wt', suffix='.sqlite3')12        self.src_database = SqliteDatabase(self.src.name)13        src_conn = self.src_database.connection14        self.create_schema(src_conn)15        self.create_data(src_conn)16        src_conn.commit()17        self.src_database.disconnect()18    def prepare_dst(self, with_schema=True):19        self.dst = NamedTemporaryFile(mode='wt', suffix='.sqlite3')20        self.dst_database = SqliteDatabase(self.dst.name)21        dst_conn = self.dst_database.connection22        if with_schema:23            self.create_schema(dst_conn)24        self.dst_database.disconnect()25    def run_with_dst_database(self, explain=False, verbosity=1):26        src_url = self.src_database.url()27        dst_url = self.dst_database.url()28        super(TestAbridgeDbForSqlite, self).run_with_dst_database(29            src_url, dst_url, self.dst_database, explain=explain,30            verbosity=verbosity)31    def test_success(self, capsys):32        self.prepare_src()33        self.prepare_dst(with_schema=True)34        self.run_with_dst_database()35        out, err = capsys.readouterr()36    def test_failure_rollback(self, capsys):37        self.prepare_src()38        self.prepare_dst(with_schema=False)39        with pytest.raises(OperationalError):40            self.run_with_dst_database()41        out, err = capsys.readouterr()42    def test_explain(self, capsys):43        self.prepare_src()44        self.prepare_dst(with_schema=False)45        with pytest.raises(SystemExit):46            self.run_with_dst_database(explain=True)47        out, err = capsys.readouterr()48        assert 'test1* -> test1.id=2 -> test2.id=2 -> test1.id=2' in out49        assert err == ''50    def test_quiet_output(self, capsys):51        self.prepare_src()52        self.prepare_dst(with_schema=True)53        self.run_with_dst_database(verbosity=0)54        out, err = capsys.readouterr()55        assert len(out) == 056        assert len(err) == 057    def check_verbosity1_output(self, out):58        assert 'Connecting to %s' % self.src_database.url() in out59        assert 'Querying' in out60        assert ('Extraction completed: '61                'fetched rows=7, '62                'tables=2, '63                'queries=3, '64                'depth=2') in out65    def check_verbosity1_output_for_url(self, out):66        self.check_verbosity1_output(out)67        assert 'Connecting to %s' % self.dst_database.url() in out68        assert 'Performing 5 inserts and 2 updates to 2 tables...' in out69        assert 'Data loading completed in' in out70    def check_verbosity1_output_for_file(self, out):71        assert 'Writing SQL for 5 inserts and 2 updates in 2 tables...' in out72        assert 'Done' in out73    def test_default_output(self, capsys):74        self.prepare_src()75        self.prepare_dst(with_schema=True)76        self.run_with_dst_database(verbosity=1)77        out, err = capsys.readouterr()78        self.check_verbosity1_output_for_url(out)79    def test_verbose_output(self, capsys):80        self.prepare_src()81        self.prepare_dst(with_schema=True)82        self.run_with_dst_database(verbosity=2)83        out, err = capsys.readouterr()84        self.check_verbosity1_output_for_url(out)85        assert ('Processing pass=1     queued=0     depth=0   tables=0    '86                'rows=0       table') in out87        assert 'Inserting' in out88        assert 'Updating' in out89    def test_f_and_u_args_mutual_exclusion(self, capsys):90        with pytest.raises(SystemExit):91            main(['foo', 'bar', '-u', 'foo', '-f', 'bar'])92        out, err = capsys.readouterr()93        assert 'Either -u or -f must be passed' in out94    def test_e_f_and_u_args(self, capsys):95        for arg in ['-u', '-f']:96            with pytest.raises(SystemExit):97                main(['foo', 'bar', '-e', arg, 'foo'])98            out, err = capsys.readouterr()99            assert '%s is meaningless when using -e' % arg in out100    def check_statements(self, stmts):101        self.prepare_dst(with_schema=True)102        self.dst_database.connect()103        dst_conn = self.dst_database.connection104        for stmt in stmts.split("\n"):105            if stmt != 'COMMIT;':106                dst_conn.execute(stmt)107        dst_conn.commit()108        self.check_dst_database(self.dst_database)109    def test_output_to_stdout(self):110        self.prepare_src()111        config_tempfile = self.make_config_tempfile()112        executable = os.path.join(113            os.path.dirname(__file__), os.pardir, os.pardir, 'bin',114            'abridge-db')115        stmts = subprocess.check_output([116            executable,117            config_tempfile.name, self.src_database.url(), '-q', '-f', '-']118        ).decode('UTF-8')119        self.check_statements(stmts)120    def test_output_to_file(self, capsys):121        self.prepare_src()122        src_url = self.src_database.url()123        config_tempfile = self.make_config_tempfile()124        dst = NamedTemporaryFile(mode='wb')125        dst.close()126        main([config_tempfile.name, src_url, '-f', dst.name])127        with open(dst.name) as f:128            self.check_statements(f.read())129        out, err = capsys.readouterr()...

test_auto_SVReg.py

Source:test_auto_SVReg.py

1# AUTO-GENERATED by tools/checkspecs.py - DO NOT EDIT2from ..brainsuite import SVReg3def test_SVReg_inputs():4    input_map = dict(5        args=dict(6            argstr="%s",7        ),8        atlasFilePrefix=dict(9            argstr="'%s'",10            position=1,11        ),12        curveMatchingInstructions=dict(13            argstr="'-cur %s'",14        ),15        dataSinkDelay=dict(16            argstr="%s",17        ),18        displayModuleName=dict(19            argstr="'-m'",20        ),21        displayTimestamps=dict(22            argstr="'-t'",23        ),24        environ=dict(25            nohash=True,26            usedefault=True,27        ),28        iterations=dict(29            argstr="'-H %d'",30        ),31        keepIntermediates=dict(32            argstr="'-k'",33        ),34        pialSurfaceMaskDilation=dict(35            argstr="'-D %d'",36        ),37        refineOutputs=dict(38            argstr="'-r'",39        ),40        shortMessages=dict(41            argstr="'-gui'",42        ),43        skipToIntensityReg=dict(44            argstr="'-p'",45        ),46        skipToVolumeReg=dict(47            argstr="'-s'",48        ),49        skipVolumetricProcessing=dict(50            argstr="'-S'",51        ),52        subjectFilePrefix=dict(53            argstr="'%s'",54            mandatory=True,55            position=0,56        ),57        useCerebrumMask=dict(58            argstr="'-C'",59        ),60        useManualMaskFile=dict(61            argstr="'-cbm'",62        ),63        useMultiThreading=dict(64            argstr="'-P'",65        ),66        useSingleThreading=dict(67            argstr="'-U'",68        ),69        verbosity0=dict(70            argstr="'-v0'",71            xor=("verbosity0", "verbosity1", "verbosity2"),72        ),73        verbosity1=dict(74            argstr="'-v1'",75            xor=("verbosity0", "verbosity1", "verbosity2"),76        ),77        verbosity2=dict(78            argstr="'v2'",79            xor=("verbosity0", "verbosity1", "verbosity2"),80        ),81    )82    inputs = SVReg.input_spec()83    for key, metadata in list(input_map.items()):84        for metakey, value in list(metadata.items()):...

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