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How to use outlines method in tox
Best Python code snippet using tox_python
evaluation.py
Source:evaluation.py 
1import sys2import math3import json4import fractions5# this function checks for the type of parsed string6def typeofvalue(text):7 try:8 int(text)9 return int10 except ValueError:11 pass12 try:13 float(text)14 return float15 except ValueError:16 pass17 try:18 fractions.Fraction(text)19 return fractions.Fraction20 except ValueError:21 pass22 return str23def fracttofloat(value):24 try:25 float(value)26 return float(value)27 except ValueError:28 return float(fractions.Fraction(value))29if len(sys.argv) > 2:30 if not len(sys.argv) == 3:31 print('usage (for decomposition solve output): '+sys.argv[0]+'-d <soplex_test_run>.out')32 quit()33elif not len(sys.argv) == 2:34 print('usage: '+sys.argv[0]+' <soplex_test_run>.out')35 quit()36# if the -d flag is provided, then we must produce the decomposition solve output37decomp = False38if sys.argv[1] == '-d':39 decomp = True40# specify columns for the output (can be modified)41columns = ['name','rows','cols','pviol','dviol','iters','polish','refs','solvetime','value','status']42ncolumns = len(columns)43if decomp:44 decompcolumns = ['ppiv','dpiv','avgpdegen','avgddegen','redprob','compprob','rediter','compiter','algiter']45 columns.extend(decompcolumns)46if decomp:47 outname = sys.argv[2]48else:49 outname = sys.argv[1]50dataname = outname.replace('.out','.json')51outfile = open(outname,'r')52outlines = outfile.readlines()53outfile.close()54testset = outname.split('/')[-1].split('.')[1]55testname = 'testset/'+testset+'.test'56soluname = 'testset/'+testset+'.solu'57# maximum length of instance names58namelength = 1859# tolerance for solution value check60tolerance = 1e-661instances = {}62stats = False63printedIdentifier = False64section = 'soplex'65for idx, outline in enumerate(outlines):66 # print identifier67 if outline.startswith('@01'):68 # convert line to used instance name69 linesplit = outline.split('/')70 linesplit = linesplit[-1].rstrip(' \n').rstrip('.gz').rstrip('.GZ').rstrip('.z').rstrip('.Z')71 linesplit = linesplit.split('.')72 instancename = linesplit[0]73 for i in range(1, len(linesplit)-1):74 instancename = instancename + '.' + linesplit[i]75 length = len(instancename)76 if length > namelength:77 shortname = instancename[0:int(namelength/2)-1] + '~' + instancename[length-int(namelength/2):]78 else:79 shortname = instancename80 # initialize new data set81 instances[instancename] = {}82 instances[instancename]['status'] = 'abort'83 instances[instancename]['name'] = shortname84 # wait for statistics block85 stats = False86 # invalidate instancename87 elif outline.startswith('=ready='):88 section = 'soplex'89 instancename = ''90 elif outline.startswith('=perplex='):91 section = 'perplex'92 stats = False93 instances[instancename]['perplex'] = 'unknown'94 elif outline.startswith('=qsoptex='):95 section = 'qsoptex'96 stats = False97 instances[instancename]['qso:stat'] = 'unknown'98 instances[instancename]['qso:lpval'] = '--'99 instances[instancename]['qso:time'] = instances[instancename]['timelimit']100 instances[instancename]['qso:prec'] = 64101 elif section == 'perplex':102 if outline.find('No such file or directory') >= 0:103 instances[instancename]['perplex'] = 'readerror'104 elif outline.startswith('Basis read'):105 instances[instancename]['perplex'] = 'timeout'106 elif outline.startswith('Solution is optimal'):107 if instances[instancename]['perplex'] == 'dinfeas':108 instances[instancename]['perplex'] = 'optimal'109 elif instances[instancename]['perplex'] == 'pdinfeas' or instances[instancename]['perplex'] == 'timeout':110 instances[instancename]['perplex'] = 'pinfeas'111 elif outline.startswith('Solution is feasible'):112 if instances[instancename]['perplex'] == 'pinfeas':113 instances[instancename]['perplex'] = 'optimal'114 elif instances[instancename]['perplex'] == 'pdinfeas' or instances[instancename]['perplex'] == 'timeout':115 instances[instancename]['perplex'] = 'dinfeas'116 elif outline.startswith('Solution is not ') and instances[instancename]['perplex'] == 'timeout':117 instances[instancename]['perplex'] = 'pdinfeas'118 elif section == 'qsoptex':119 if outline.startswith('Time for SOLVER:'):120 instances[instancename]['qso:time'] = float(outline.split()[-2])121 elif outline.find('Problem Solved Exactly') >= 0:122 instances[instancename]['qso:stat'] = 'optimal'123 elif outline.find('Problem Is Infeasible') >= 0:124 instances[instancename]['qso:stat'] = 'infeasible'125 elif outline.startswith('@24') and instances[instancename]['qso:time'] >= instances[instancename]['timelimit']:126 instances[instancename]['qso:stat'] = 'timeout'127 elif outline.startswith('LP Value'):128 instances[instancename]['qso:lpval'] = outline.split()[2].rstrip(',')129 elif outline.find('Trying mpf with') >= 0:130 instances[instancename]['qso:prec'] = max( int(outline.split()[3]), instances[instancename]['qso:prec'] )131 elif outline.startswith('SoPlex version'):132 instances[instancename]['githash'] = outline.split()[-1].rstrip(']')[0:9]133 if not printedIdentifier:134 printedIdentifier = True135 print('\n')136 print(outline)137 elif outline.startswith('Primal solution infeasible') or outline.startswith('Dual solution infeasible'):138 instances[instancename]['status'] = 'fail'139 elif outline.startswith('real:timelimit'):140 instances[instancename]['timelimit'] = float(outline.split()[-1])141 elif outline.startswith('Statistics'):142 stats = True143 if stats:144 if outline.startswith('SoPlex status') and not instances[instancename]['status'] == 'fail':145 if outline.find('time limit') >= 0:146 instances[instancename]['status'] = 'timeout'147 else:148 instances[instancename]['status'] = outline.split()[-1].strip('[]')149 elif outline.startswith('Solution'):150 instances[instancename]['value'] = fracttofloat(outlines[idx+1].split()[-1])151 elif outline.startswith('Original problem'):152 instances[instancename]['cols'] = int(outlines[idx+1].split()[2])153 instances[instancename]['boxedcols'] = int(outlines[idx+2].split()[2])154 instances[instancename]['lbcols'] = int(outlines[idx+3].split()[3])155 instances[instancename]['ubcols'] = int(outlines[idx+4].split()[3])156 instances[instancename]['freecols'] = int(outlines[idx+5].split()[2])157 instances[instancename]['rows'] = int(outlines[idx+6].split()[2])158 instances[instancename]['rangedrows'] = int(outlines[idx+7].split()[2])159 instances[instancename]['lhsrows'] = int(outlines[idx+8].split()[2])160 instances[instancename]['rhsrows'] = int(outlines[idx+9].split()[2])161 instances[instancename]['freerows'] = int(outlines[idx+10].split()[2])162 instances[instancename]['nonzeros'] = int(outlines[idx+11].split()[2])163 instances[instancename]['colnonzeros'] = float(outlines[idx+12].split()[3])164 instances[instancename]['rownonzeros'] = float(outlines[idx+13].split()[3])165 instances[instancename]['sparsity'] = float(outlines[idx+14].split()[2])166 instances[instancename]['minabsval'] = float(outlines[idx+15].split()[4])167 instances[instancename]['maxabsval'] = float(outlines[idx+16].split()[4])168 elif outline.startswith('Violation'):169 primviol = outlines[idx+2].split()[3]170 dualviol = outlines[idx+3].split()[3]171 if typeofvalue(primviol) in [int,float,fractions.Fraction] and typeofvalue(dualviol) in [int,float,fractions.Fraction]:172 instances[instancename]['pviol'] = float("{:.2e}".format(fracttofloat(primviol)))173 instances[instancename]['dviol'] = float("{:.2e}".format(fracttofloat(dualviol)))174 else:175 instances[instancename]['pviol'] = '-'176 instances[instancename]['dviol'] = '-'177 elif outline.startswith('Total time'):178 instances[instancename]['time'] = float(outline.split()[3])179 instances[instancename]['readtime'] = float(outlines[idx+1].split()[2])180 instances[instancename]['solvetime'] = float(outlines[idx+2].split()[2])181 instances[instancename]['preproctime'] = float(outlines[idx+3].split()[2])182 instances[instancename]['simplextime'] = float(outlines[idx+4].split()[2])183 instances[instancename]['synctime'] = float(outlines[idx+5].split()[2])184 instances[instancename]['transformtime'] = float(outlines[idx+6].split()[2])185 instances[instancename]['rationaltime'] = float(outlines[idx+7].split()[2])186 instances[instancename]['othertime'] = float(outlines[idx+8].split()[2])187 elif outline.startswith('Refinements'):188 instances[instancename]['refs'] = int(outline.split()[2])189 instances[instancename]['stallrefs'] = int(outlines[idx+1].split()[2])190 instances[instancename]['pivrefs'] = int(outlines[idx+2].split()[2])191 instances[instancename]['feasrefs'] = int(outlines[idx+3].split()[2])192 instances[instancename]['unbdrefs'] = int(outlines[idx+4].split()[2])193 elif outline.startswith('Iterations'):194 instances[instancename]['iters'] = int(outline.split()[2])195 instances[instancename]['scratchiters'] = int(outlines[idx+1].split()[3])196 instances[instancename]['basisiters'] = int(outlines[idx+2].split()[3])197 instances[instancename]['primaliters'] = int(outlines[idx+3].split()[2])198 instances[instancename]['dualiters'] = int(outlines[idx+4].split()[2])199 instances[instancename]['flips'] = int(outlines[idx+5].split()[3])200 instances[instancename]['polish'] = int(outlines[idx+6].split()[-1])201 instances[instancename]['speed'] = round(float(instances[instancename]['iters'])/max(instances[instancename]['solvetime'],tolerance),2)202 elif outline.startswith('LU factorizations'):203 instances[instancename]['lufacts'] = int(outline.split()[3])204 instances[instancename]['factortime'] = float(outlines[idx+2].split()[3])205 elif outline.startswith('LU solves'):206 instances[instancename]['lusolves'] = int(outline.split()[3])207 instances[instancename]['lusolvetime'] = float(outlines[idx+2].split()[3])208 elif decomp:209 if outline.startswith('Degeneracy'):210 instances[instancename]['ppiv'] = int(outlines[idx + 1].split()[3])211 instances[instancename]['dpiv'] = int(outlines[idx + 2].split()[3])212 instances[instancename]['primcand'] = int(outlines[idx + 3].split()[3])213 instances[instancename]['dualcand'] = int(outlines[idx + 4].split()[3])214 instances[instancename]['avgpdegen'] = float(outlines[idx + 5].split()[3])215 instances[instancename]['avgddegen'] = float(outlines[idx + 6].split()[3])216 elif outline.startswith('Algorithm Iterations'):217 instances[instancename]['algiter'] = int(outline.split()[2])218 elif outline.startswith('Decomp. Iterations'):219 instances[instancename]['rediter'] = int(outlines[idx + 3].split()[3])220 instances[instancename]['compiter'] = int(outlines[idx + 4].split()[3])221 elif outline.startswith('Red. Problem Status'):222 instances[instancename]['redprob'] = int(outline.split()[4])223 elif outline.startswith('Comp. Problem Status'):224 instances[instancename]['compprob'] = int(outline.split()[3])225# try parsing solution file226check_solu = False227try:228 with open(soluname):229 check_solu = True230except IOError:231 check_solu = False232if check_solu:233 solufile = open(soluname,'r')234 for soluline in solufile:235 solu = soluline.split()236 tag = solu[0]237 name = solu[1]238 if len(solu) == 3:239 value = solu[2]240 if typeofvalue(value) in [int,float]:241 value = float(value)242 else:243 if tag == '=inf=':244 value = 'infeasible'245 else:246 value = 'unknown'247 if name in instances:248 instances[name]['soluval'] = value249 if not instances[name]['status'] in ['timeout', 'fail', 'abort']:250 # check solution status251 if value in ['infeasible', 'unbounded']:252 if not instances[name]['status'] == value:253 instances[name]['status'] = 'inconsistent'254 elif value == 'unknown':255 instances[name]['status'] = 'not verified'256 elif (abs(instances[name]['value'] - value))/max(abs(instances[name]['value']),abs(value),tolerance) > tolerance:257 instances[name]['status'] = 'inconsistent'258 solufile.close()259# save dictionary to file later use in compare script260with open(dataname, 'w') as f:261 json.dump(instances, f)262# count solution status263fails = sum(1 for name in instances if instances[name]['status'] == 'fail')264timeouts = sum(1 for name in instances if instances[name]['status'] == 'timeout')265infeasible = sum(1 for name in instances if instances[name]['status'] == 'infeasible')266unbounded = sum(1 for name in instances if instances[name]['status'] == 'unbounded')267optimal = sum(1 for name in instances if instances[name]['status'] == 'optimal')268aborts = sum(1 for name in instances if instances[name]['status'] == 'abort')269inconsistents = sum(1 for name in instances if instances[name]['status'] == 'inconsistent')270length = []271output = ''272# calculate maximum width of each column273for i,c in enumerate(columns):274 length.append(len(c))275 for name in instances:276 length[i] = max(length[i],len(str(instances[name].get(c,''))))277 if i == ncolumns:278 output = output + ' |'279 output = output + ' ' + c.rjust(length[i] + 1)280# print column header281print(output)282print('-'*len(output))283# print data for all instances with the computed length284for name in sorted(instances):285 output = ''286 for i,c in enumerate(columns):287 if i == ncolumns:288 output = output + ' |'289 output = output + ' ' + str(instances[name].get(c, '--')).rjust(length[i] + 1)290 print(output)291print('\nResults (testset '+testname.split('/')[-1].split('.')[-2]+', settings '+outname.split('/')[-1].split('.')[-2]+'):')292print('{} total: {} optimal, {} infeasible, {} unbounded, {} timeouts, {} inconsistents, {} fails, {} aborts'.format(len(instances),optimal,infeasible,unbounded,timeouts,inconsistents,fails,aborts))293# try to check for missing files294check_test = False295try:296 with open(testname):297 check_test = True298except IOError:299 print('No testset file found to check run for completeness.')300if not check_solu:301 print('No solution file found to check objective values.')302if check_test:303 testfile = open(testname,'r')304 printedMissing = False305 for testline in testfile:306 linesplit = testline.split('/')307 linesplit = linesplit[len(linesplit) - 1].rstrip(' \n').rstrip('.gz').rstrip('.GZ').rstrip('.z').rstrip('.Z')308 linesplit = linesplit.split('.')309 instancename = linesplit[0]310 for i in range(1, len(linesplit)-1):311 instancename = instancename + '.' + linesplit[i]312 if not instancename in instances:313 if not printedMissing:314 print('\n')315 print('missing instance: '+instancename)316 printedMissing = True...
GenGMMHMMproto.py
Source:GenGMMHMMproto.py
1import os2import sys3inDIM = int(sys.argv[1])4inFEA = sys.argv[2]5inNSTATE = int(sys.argv[3])6outPROTO = sys.argv[4]7def GetIdentStr(dim, val):8 retval = ""9 for idx in range(0, dim):10 retval += " %e" % val11 return retval12outlines = []13# headline14outlines.append("~o <VECSIZE> %d <%s>" % (inDIM, inFEA))15# HMM macro16outlines.append('~h "proto"')17# <BEGINHMM>18outlines.append('<BEGINHMM>')19# <NUMSTATES>20outlines.append("<NUMSTATES> %d" % inNSTATE)21# for each state22index = 223while index < inNSTATE:24 # <STATE>25 outlines.append("<STATE> %d" % index)26 # <MEAN>27 outlines.append("<MEAN> %d" % inDIM)28 outlines.append(GetIdentStr(inDIM, 0.0))29 # <VARIANCE>30 outlines.append("<VARIANCE> %d" % inDIM)31 outlines.append(GetIdentStr(inDIM, 1.0))32 index += 133# <TRANSP>34outlines.append("<TRANSP> %d" % inNSTATE)35for ridx in range(0, inNSTATE):36 transline = ""37 for cidx in range(0, inNSTATE):38 if ridx == 0:39 if cidx == 1:40 transline += " %e" % 1.041 else:42 transline += " %e" % 0.043 elif ridx == inNSTATE - 1:44 transline += " %e" % 0.045 else:46 if cidx == ridx:47 transline += " %e" % 0.648 elif cidx == ridx + 1:49 transline += " %e" % 0.450 else:51 transline += " %e" % 0.052 outlines.append(transline)53# <ENDHMM>54outlines.append('<ENDHMM>')55file = open(outPROTO, 'w')56for eachline in outlines:57 file.write(eachline + os.linesep)...
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