How to use median method in pytest-benchmark

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borough_renting_data.py

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1# BBC 2019 https://www.bbc.co.uk/news/business-23234033...

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config.py

Source:config.py Github

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1#!/usr/bin/env python32# -*- coding: utf-8 -*-3"""4######5Config6######7*Created on Mon Jun 12 14:10 2017 by A. Pahl*8Configuration variables, e.g. the list of parameters from which to generate the Activity Profile.."""9# Parameters from parameters_0.0005_0.025_773_0.90_307.txt (24-Aug-2017)10# #Parameters11# relevant_parameters(ctrls_std_rel_min=0.0005, ctrls_std_rel_max=0.0025): 77312# correlation_filter_var(cutoff=0.90): 30713ACT_PROF_PARAMETERS = [14 "Median_Cells_AreaShape_Area",15 "Median_Cells_AreaShape_MaximumRadius",16 "Median_Cells_AreaShape_MedianRadius",17 "Median_Cells_AreaShape_MinFeretDiameter",18 "Median_Cells_AreaShape_MinorAxisLength",19 "Median_Cells_Correlation_Correlation_ER_Ph_golgi",20 "Median_Cells_Correlation_Correlation_ER_Syto",21 "Median_Cells_Correlation_Correlation_Hoechst_ER",22 "Median_Cells_Correlation_Correlation_Hoechst_Mito",23 "Median_Cells_Correlation_Correlation_Hoechst_Ph_golgi",24 "Median_Cells_Correlation_Correlation_Hoechst_Syto",25 "Median_Cells_Correlation_Correlation_Mito_Ph_golgi",26 "Median_Cells_Correlation_Correlation_Mito_Syto",27 "Median_Cells_Correlation_Correlation_Syto_Ph_golgi",28 "Median_Cells_Correlation_K_ER_Syto",29 "Median_Cells_Correlation_K_Mito_Hoechst",30 "Median_Cells_Correlation_K_Ph_golgi_Syto",31 "Median_Cells_Correlation_K_Syto_ER",32 "Median_Cells_Correlation_K_Syto_Hoechst",33 "Median_Cells_Correlation_K_Syto_Ph_golgi",34 "Median_Cells_Correlation_Manders_ER_Syto",35 "Median_Cells_Correlation_Manders_Mito_Syto",36 "Median_Cells_Correlation_Overlap_ER_Syto",37 "Median_Cells_Correlation_Overlap_Hoechst_ER",38 "Median_Cells_Correlation_Overlap_Hoechst_Mito",39 "Median_Cells_Correlation_Overlap_Hoechst_Ph_golgi",40 "Median_Cells_Correlation_Overlap_Hoechst_Syto",41 "Median_Cells_Correlation_Overlap_Mito_Ph_golgi",42 "Median_Cells_Correlation_Overlap_Mito_Syto",43 "Median_Cells_Correlation_Overlap_Syto_Ph_golgi",44 "Median_Cells_Correlation_RWC_ER_Ph_golgi",45 "Median_Cells_Correlation_RWC_Hoechst_Mito",46 "Median_Cells_Correlation_RWC_Hoechst_Syto",47 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"Median_Cells_Intensity_MassDisplacement_Mito",70 "Median_Cells_Intensity_MassDisplacement_Ph_golgi",71 "Median_Cells_Intensity_MaxIntensityEdge_Mito",72 "Median_Cells_Intensity_MaxIntensityEdge_Syto",73 "Median_Cells_Intensity_MaxIntensity_Hoechst",74 "Median_Cells_Intensity_MaxIntensity_Mito",75 "Median_Cells_Intensity_MaxIntensity_Ph_golgi",76 "Median_Cells_Intensity_MaxIntensity_Syto",77 "Median_Cells_Intensity_MeanIntensityEdge_Mito",78 "Median_Cells_Intensity_MeanIntensityEdge_Syto",79 "Median_Cells_Intensity_MeanIntensity_Mito",80 "Median_Cells_Intensity_MeanIntensity_Syto",81 "Median_Cells_Intensity_MedianIntensity_Mito",82 "Median_Cells_Intensity_MedianIntensity_Syto",83 "Median_Cells_Intensity_MinIntensityEdge_Mito",84 "Median_Cells_Intensity_MinIntensity_Mito",85 "Median_Cells_Intensity_StdIntensityEdge_Syto",86 "Median_Cells_Intensity_StdIntensity_Hoechst",87 "Median_Cells_Intensity_StdIntensity_Ph_golgi",88 "Median_Cells_Intensity_UpperQuartileIntensity_Syto",89 "Median_Cells_RadialDistribution_FracAtD_ER_1of4",90 "Median_Cells_RadialDistribution_FracAtD_ER_2of4",91 "Median_Cells_RadialDistribution_FracAtD_Mito_1of4",92 "Median_Cells_RadialDistribution_FracAtD_Mito_2of4",93 "Median_Cells_RadialDistribution_FracAtD_Mito_3of4",94 "Median_Cells_RadialDistribution_FracAtD_Mito_4of4",95 "Median_Cells_RadialDistribution_FracAtD_Ph_golgi_1of4",96 "Median_Cells_RadialDistribution_FracAtD_Ph_golgi_2of4",97 "Median_Cells_RadialDistribution_FracAtD_Ph_golgi_3of4",98 "Median_Cells_RadialDistribution_FracAtD_Ph_golgi_4of4",99 "Median_Cells_RadialDistribution_FracAtD_Syto_1of4",100 "Median_Cells_RadialDistribution_FracAtD_Syto_2of4",101 "Median_Cells_RadialDistribution_FracAtD_Syto_4of4",102 "Median_Cells_RadialDistribution_MeanFrac_Mito_1of4",103 "Median_Cells_RadialDistribution_MeanFrac_Mito_2of4",104 "Median_Cells_RadialDistribution_MeanFrac_Mito_3of4",105 "Median_Cells_RadialDistribution_MeanFrac_Mito_4of4",106 "Median_Cells_RadialDistribution_MeanFrac_Ph_golgi_1of4",107 "Median_Cells_RadialDistribution_MeanFrac_Ph_golgi_2of4",108 "Median_Cells_RadialDistribution_MeanFrac_Ph_golgi_3of4",109 "Median_Cells_RadialDistribution_MeanFrac_Ph_golgi_4of4",110 "Median_Cells_RadialDistribution_MeanFrac_Syto_1of4",111 "Median_Cells_RadialDistribution_MeanFrac_Syto_2of4",112 "Median_Cells_RadialDistribution_RadialCV_Mito_2of4",113 "Median_Cells_RadialDistribution_RadialCV_Mito_3of4",114 "Median_Cells_RadialDistribution_RadialCV_Mito_4of4",115 "Median_Cells_RadialDistribution_RadialCV_Ph_golgi_1of4",116 "Median_Cells_RadialDistribution_RadialCV_Ph_golgi_2of4",117 "Median_Cells_RadialDistribution_RadialCV_Ph_golgi_3of4",118 "Median_Cells_RadialDistribution_RadialCV_Syto_1of4",119 "Median_Cells_RadialDistribution_RadialCV_Syto_2of4",120 "Median_Cells_Texture_AngularSecondMoment_Mito_10_00",121 "Median_Cells_Texture_AngularSecondMoment_Mito_3_00",122 "Median_Cells_Texture_AngularSecondMoment_Mito_5_00",123 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75...

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42,1166 "population": 19168,1167 "medianHouseholdIncome": 686751168 },1169 "11429": {1170 "borough": "Queens",1171 "evictions": 55,1172 "population": 25105,1173 "medianHouseholdIncome": 770371174 },1175 "11430": {1176 "borough": "Queens",1177 "evictions": 0,1178 "population": 1841179 },1180 "11432": {1181 "borough": "Queens",1182 "evictions": 171,1183 "population": 60809,1184 "medianHouseholdIncome": 522771185 },1186 "11433": {1187 "borough": "Queens",1188 "evictions": 157,1189 "population": 32687,1190 "medianHouseholdIncome": 458201191 },1192 "11434": {1193 "borough": "Queens",1194 "evictions": 159,1195 "population": 59129,1196 "medianHouseholdIncome": 574541197 },1198 "11435": {1199 "borough": "Queens",1200 "evictions": 155,1201 "population": 53687,1202 "medianHouseholdIncome": 552681203 },1204 "11436": {1205 "borough": "Queens",1206 "evictions": 45,1207 "population": 17949,1208 "medianHouseholdIncome": 668371209 },1210 "11451": {1211 "borough": "Queens",1212 "evictions": 0,1213 "population": 01214 },1215 "11691": {1216 "borough": "Queens",1217 "evictions": 289,1218 "population": 60035,1219 "medianHouseholdIncome": 411901220 },1221 "11692": {1222 "borough": "Queens",1223 "evictions": 120,1224 "population": 18540,1225 "medianHouseholdIncome": 423331226 },1227 "11693": {1228 "borough": "Queens",1229 "evictions": 33,1230 "population": 11916,1231 "medianHouseholdIncome": 538291232 },1233 "11694": {1234 "borough": "Queens",1235 "evictions": 53,1236 "population": 20408,1237 "medianHouseholdIncome": 791451238 },1239 "11697": {1240 "borough": "Queens",1241 "evictions": 0,1242 "population": 4079,1243 "medianHouseholdIncome": 1009091244 }1245 }1246var activeNeighborhood;1247map.setPaintProperty("ny-zip-codes-dilq1b", "fill-opacity", ["case", ["boolean", ["feature-state", "hover"], false], 1, 0.5]);1248map.on("mousemove", "nta", function (e) {1249 if (e.features.length > 0) {1250 activeNeighborhood = e.features[0].properties.NTAName1251 }1252})1253map.on("mousemove", "ny-zip-codes-dilq1b", function (e) {1254 if (e.features.length > 0) {1255 if (hoveredZip) {1256 var coordinates = [parseFloat(e.features[0].properties.INTPTLON10), parseFloat(e.features[0].properties.INTPTLAT10)];1257 var zipcode = e.features[0].properties.ZCTA5CE10;1258 if (zipCodeStats.hasOwnProperty(zipcode)) {1259 //Do this1260 var zipcodeRecord = zipCodeStats[zipcode];1261 var evictions = zipcodeRecord.evictions;1262 var population = zipcodeRecord.population;1263 var borough = zipcodeRecord.borough;1264 var income = zipcodeRecord.medianHouseholdIncome;1265 var rtcText = zipCodesRTC.includes(zipcode) ? "Zipcode currently eligible for Right To Counsel" : "Zipcode not yet eligible for Right To Counsel"1266 // var neighborhoodText = "Neighborhood: " + neighborhoods.find(x => x.zcta10 === zipcode).nameshort + "<br />";1267 var neighborhoodText = "Neighborhood: " + activeNeighborhood + "<br />";1268 // var neighborhoodsForZip = neighborhoods.find(x => x.zcta10 === zipcode);1269 // var neighborhoodText = "1270 // if (neighborhoodsForZip.length > 0) {1271 // neighborhoodText = "Neighborhoods: " + neighborhoodsForZip.filter(x => parseFloat(x.per_in_puma) > 0.1).map(x => x.nameshort + " (" + (x.per_in_puma * 100).toString() + "%)").join(" ") + "<br />";1272 // }1273 console.log(income);1274 if (income == undefined){1275 console.log("Hello");1276 income = " not avaliable";1277 }1278 var description = "Zip Code: " + zipcode + "<br />"1279 + "Borough: " + borough + "<br />"1280 + neighborhoodText1281 +"Eviction orders in 2017: " + evictions + "<br />"1282 + "Population: " + population.toLocaleString() + "<br />"1283 + "Median Household Income: $" + income.toLocaleString() + "<br />" +1284 rtcText + "<br />"1285 popup.setLngLat(coordinates)1286 .setHTML(description)1287 .addTo(map);1288 }1289 }1290 hoveredZip = e.features[0].properties.ZCTA5CE10;1291 }1292});1293// When the mouse leaves the state-fill layer, update the feature state of the1294// previously hovered feature.1295map.on("mouseleave", "ny-zip-codes-dilq1b", function () {1296 map.getCanvas().style.cursor = '';1297 popup.remove();1298 hoveredZip = null;1299});...

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json_writer.js

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1var fs = require("fs");2var obj = require('./ny_new_york_zip_codes_geo.min');3var zipCodeStats = {4 "10001": {5 "borough": "Manhattan",6 "evictions": 46,7 "population": 21102,8 "medianHouseholdIncome": 851689 },10 "10002": {11 "borough": "Manhattan",12 "evictions": 77,13 "population": 81410,14 "medianHouseholdIncome": 3559415 },16 "10003": {17 "borough": "Manhattan",18 "evictions": 42,19 "population": 56024,20 "medianHouseholdIncome": 10079121 },22 "10004": {23 "borough": "Manhattan",24 "evictions": 3,25 "population": 3089,26 "medianHouseholdIncome": 12305627 },28 "10005": {29 "borough": "Manhattan",30 "evictions": 14,31 "population": 7135,32 "medianHouseholdIncome": 13011633 },34 "10006": {35 "borough": "Manhattan",36 "evictions": 7,37 "population": 3011,38 "medianHouseholdIncome": 12536439 },40 "10007": {41 "borough": "Manhattan",42 "evictions": 5,43 "population": 6988,44 "medianHouseholdIncome": 23495845 },46 "10009": {47 "borough": "Manhattan",48 "evictions": 102,49 "population": 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"population": 01132 },1133 "11425": {1134 "borough": "Brooklyn",1135 "evictions": 0,1136 "population": 01137 },1138 "11426": {1139 "borough": "Queens",1140 "evictions": 12,1141 "population": 17590,1142 "medianHouseholdIncome": 774871143 },1144 "11427": {1145 "borough": "Queens",1146 "evictions": 40,1147 "population": 23593,1148 "medianHouseholdIncome": 654941149 },1150 "11428": {1151 "borough": "Queens",1152 "evictions": 42,1153 "population": 19168,1154 "medianHouseholdIncome": 686751155 },1156 "11429": {1157 "borough": "Queens",1158 "evictions": 55,1159 "population": 25105,1160 "medianHouseholdIncome": 770371161 },1162 "11430": {1163 "borough": "Queens",1164 "evictions": 0,1165 "population": 1841166 },1167 "11432": {1168 "borough": "Queens",1169 "evictions": 171,1170 "population": 60809,1171 "medianHouseholdIncome": 522771172 },1173 "11433": {1174 "borough": "Queens",1175 "evictions": 157,1176 "population": 32687,1177 "medianHouseholdIncome": 458201178 },1179 "11434": {1180 "borough": "Queens",1181 "evictions": 159,1182 "population": 59129,1183 "medianHouseholdIncome": 574541184 },1185 "11435": {1186 "borough": "Queens",1187 "evictions": 155,1188 "population": 53687,1189 "medianHouseholdIncome": 552681190 },1191 "11436": {1192 "borough": "Queens",1193 "evictions": 45,1194 "population": 17949,1195 "medianHouseholdIncome": 668371196 },1197 "11451": {1198 "borough": "Queens",1199 "evictions": 0,1200 "population": 01201 },1202 "11691": {1203 "borough": "Queens",1204 "evictions": 289,1205 "population": 60035,1206 "medianHouseholdIncome": 411901207 },1208 "11692": {1209 "borough": "Queens",1210 "evictions": 120,1211 "population": 18540,1212 "medianHouseholdIncome": 423331213 },1214 "11693": {1215 "borough": "Queens",1216 "evictions": 33,1217 "population": 11916,1218 "medianHouseholdIncome": 538291219 },1220 "11694": {1221 "borough": "Queens",1222 "evictions": 53,1223 "population": 20408,1224 "medianHouseholdIncome": 791451225 },1226 "11697": {1227 "borough": "Queens",1228 "evictions": 0,1229 "population": 4079,1230 "medianHouseholdIncome": 1009091231 }1232}1233var zipCodeList = Object.keys(zipCodeStats);1234var filteredZips = obj["features"].filter(x => zipCodeList.includes(x.properties.ZCTA5CE10));1235obj["features"] = filteredZips;1236fs.writeFile("./ny_zip_codes.json", JSON.stringify(obj), (err) => {1237 if (err) {1238 console.error(err);1239 return;1240 };1241 console.log("File has been created");1242});1243var zipCodesRTC = [11216, 11221, 11225, 10457, 10467, 10468, 10026, 10025, 10027, 11433, 11434, 11373, 10302, 10303, 10314].map(x => x.toString());1244var filteredZips = obj["features"].filter(x => zipCodesRTC.includes(x.properties.ZCTA5CE10));1245obj["features"] = filteredZips;1246fs.writeFile("./ny_zip_codes_rtc.json", JSON.stringify(obj), (err) => {1247 if (err) {1248 console.error(err);1249 return;1250 };1251 console.log("File has been created");...

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