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How to use two_sample_ttest method in pandera

Best Python code snippet using pandera_python

test_hypotheses.py

Source:test_hypotheses.py

...91        {92            "height_in_feet": Column(93                Float,94                [95                    Hypothesis.two_sample_ttest(96                        sample1="M",97                        sample2="F",98                        groupby="sex",99                        relationship="greater_than",100                        alpha=0.5,101                    ),102                ],103            ),104            "sex": Column(String),105        }106    )107    schema_pass_ttest_on_alpha_val_2 = DataFrameSchema(108        {109            "height_in_feet": Column(110                Float,111                [112                    Hypothesis(113                        test=stats.ttest_ind,114                        samples=["M", "F"],115                        groupby="sex",116                        relationship="greater_than",117                        relationship_kwargs={"alpha": 0.5},118                    ),119                ],120            ),121            "sex": Column(String),122        }123    )124    schema_pass_ttest_on_alpha_val_3 = DataFrameSchema(125        {126            "height_in_feet": Column(127                Float,128                [129                    Hypothesis.two_sample_ttest(130                        sample1="M",131                        sample2="F",132                        groupby="sex",133                        relationship="greater_than",134                        alpha=0.5,135                    ),136                ],137            ),138            "sex": Column(String),139        }140    )141    schema_pass_ttest_on_custom_relationship = DataFrameSchema(142        {143            "height_in_feet": Column(144                Float,145                [146                    Hypothesis(147                        test=stats.ttest_ind,148                        samples=["M", "F"],149                        groupby="sex",150                        relationship=lambda stat, pvalue, alpha=0.01: (151                            stat > 0 and pvalue / 2 < alpha152                        ),153                        relationship_kwargs={"alpha": 0.5},154                    )155                ],156            ),157            "sex": Column(String),158        }159    )160    # Check the 3 happy paths are successful:161    schema_pass_ttest_on_alpha_val_1.validate(df)162    schema_pass_ttest_on_alpha_val_2.validate(df)163    schema_pass_ttest_on_alpha_val_3.validate(df)164    schema_pass_ttest_on_custom_relationship.validate(df)165    schema_fail_ttest_on_alpha_val_1 = DataFrameSchema(166        {167            "height_in_feet": Column(168                Float,169                [170                    Hypothesis.two_sample_ttest(171                        sample1="M",172                        sample2="F",173                        groupby="sex",174                        relationship="greater_than",175                        alpha=0.05,176                    ),177                ],178            ),179            "sex": Column(String),180        }181    )182    schema_fail_ttest_on_alpha_val_2 = DataFrameSchema(183        {184            "height_in_feet": Column(185                Float,186                [187                    Hypothesis(188                        test=stats.ttest_ind,189                        samples=["M", "F"],190                        groupby="sex",191                        relationship="greater_than",192                        relationship_kwargs={"alpha": 0.05},193                    ),194                ],195            ),196            "sex": Column(String),197        }198    )199    schema_fail_ttest_on_alpha_val_3 = DataFrameSchema(200        {201            "height_in_feet": Column(202                Float,203                [204                    Hypothesis.two_sample_ttest(205                        sample1="M",206                        sample2="F",207                        groupby="sex",208                        relationship="greater_than",209                        alpha=0.05,210                    ),211                ],212            ),213            "sex": Column(String),214        }215    )216    with pytest.raises(errors.SchemaError):217        schema_fail_ttest_on_alpha_val_1.validate(df)218    with pytest.raises(errors.SchemaError):219        schema_fail_ttest_on_alpha_val_2.validate(df)220    with pytest.raises(errors.SchemaError):221        schema_fail_ttest_on_alpha_val_3.validate(df)222def test_two_sample_ttest_hypothesis_relationships():223    """Check allowable relationships in two-sample ttest."""224    for relationship in Hypothesis.RELATIONSHIPS:225        schema = DataFrameSchema(226            {227                "height_in_feet": Column(228                    Float,229                    [230                        Hypothesis.two_sample_ttest(231                            sample1="M",232                            sample2="F",233                            groupby="sex",234                            relationship=relationship,235                            alpha=0.5,236                        ),237                    ],238                ),239                "sex": Column(String),240            }241        )242        assert isinstance(schema, DataFrameSchema)243    for relationship in ["foo", "bar", 1, 2, 3, None]:244        with pytest.raises(errors.SchemaInitError):245            DataFrameSchema(246                {247                    "height_in_feet": Column(248                        Float,249                        [250                            Hypothesis.two_sample_ttest(251                                sample1="M",252                                sample2="F",253                                groupby="sex",254                                relationship=relationship,255                                alpha=0.5,256                            ),257                        ],258                    ),259                    "sex": Column(String),260                }261            )262def test_one_sample_hypothesis():263    """Check one sample ttest."""264    schema = DataFrameSchema(...

hypothesis_testing.py

Source:hypothesis_testing.py

2import sqlite33import sys4sys.path.append('../')5from Spotify_Song_Data import getSongData6def two_sample_ttest(peak_values, trough_values):7    """8    Input:9        - peak_values: the attribute values of songs during a COVID peak time period10        - trough_values the attribute values of songs from a COVID trough time period11    Output:12        - tstats: Test statistics (float)13        - p-value: P-value (float)14    """15    # Using scipy's ttest_ind16    # (https://docs.scipy.org/doc/scipy/reference/generated/scipy.stats.ttest_ind.html)17    # to get the t-statistic and the p-value18    # Note: The code will disregard null (nan) values. We will assume equal variance.19    # Indepdendent two sample t-test, since testing unknown population means of 20    # two groups21    tstats, pvalue = ttest_ind(peak_values, trough_values, nan_policy='omit')22    # Print tstats, pvalue23    print("two_sample_ttest tstats: ", tstats)24    print("two_sample_ttest pvalue: ", pvalue)25    return tstats, pvalue26def get_songs_by_date(month, day, year):27    db = "/Users/mohammedakel/Desktop/CS1951A-Spring2022/rim-dj/data_deliverable/data/billboard.db"28    # create a database connection29    conn = sqlite3.connect(db)30    cur = conn.cursor()31    cur.execute("SELECT title, artist FROM billboard WHERE month=? AND day=? AND year=?", (month, day, year,))32    rows = cur.fetchall()33    song_titles = []34    artist_names = []35    for row in rows:36        song_titles.append(row[0])37        artist_names.append(row[1])38    return song_titles, artist_names39def get_peak_attribute(attribute):40    # Peaks: 4/10/2020, 7/24/2020, 1/11/2021, 9/13/2021, 1/15/202241    titles = []42    names = []43    attribute_values = []44    45    titles_one, names_one = get_songs_by_date(4, 10, 2020)46    titles_two, names_two = get_songs_by_date(7, 24, 2020)47    titles_three, names_three = get_songs_by_date(1, 11, 2021)48    titles_four, names_four = get_songs_by_date(9, 13, 2021)49    titles_five, names_five = get_songs_by_date(1, 15, 2022)50    titles = titles + titles_one + titles_two + titles_three + titles_four + titles_five51    names = names + names_one + names_two + names_three + names_four + names_five52    for i in range(len(titles)):53        song = getSongData(titles[i], names[i], 1)54        if len(song) != 0:55            attribute_values.append(song[0][attribute])56    return attribute_values57def get_trough_attribute(attribute):58    # Troughs: 9/11/2020, 12/30/2020, 6/22/2021, 10/26/2021, 11/28/202159    titles = []60    names = []61    attribute_values = []62    63    titles_one, names_one = get_songs_by_date(9, 11, 2020)64    titles_two, names_two = get_songs_by_date(12, 30, 2020)65    titles_three, names_three = get_songs_by_date(6, 22, 2021)66    titles_four, names_four = get_songs_by_date(10, 26, 2021)67    titles_five, names_five = get_songs_by_date(11, 28, 2022)68    titles = titles + titles_one + titles_two + titles_three + titles_four + titles_five69    names = names + names_one + names_two + names_three + names_four + names_five70    for i in range(len(titles)):71        song = getSongData(titles[i], names[i], 1)72        if len(song) != 0:73            attribute_values.append(song[0][attribute])74    return attribute_values75'''76if __name__ == "__main__":77    # get the peak values and trough values for testing per attribute78    # Note: we can test additional attributes by changing the input argument in get_[peak/trough]_attribute()79    print("---Testing Danceability Difference---")80    peak_danceability = get_peak_attribute("danceability")81    trough_danceability = get_trough_attribute("danceability")82    two_sample_ttest(peak_values=peak_danceability, trough_values=trough_danceability)83    print("---Testing Energy Difference---")84    peak_energy = get_peak_attribute("energy")85    trough_energy = get_trough_attribute("energy")86    two_sample_ttest(peak_values=peak_energy, trough_values=trough_energy)87    print("---Testing Valence Difference---")88    peak_valence = get_peak_attribute("valence")89    trough_valence = get_trough_attribute("valence")90    two_sample_ttest(peak_values=peak_valence, trough_values=trough_valence)91'''92    ...

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