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How to use update_association method in localstack

Best Python code snippet using localstack_python

geneSymbols.py

Source:geneSymbols.py

...72        raise Exception("Error: invalid field_type")73    gene_dict = {x[key_field]: x for x in genes}74    # Now, recursively crawl the gene association structure75    #   and update all gene entries76    def update_association(assoc):77        if assoc.type == "gene":78            gene = assoc.gene79            if gene.name in gene_dict:80                gene_info = gene_dict[gene.name]81                gene.name = gene_info['symbol'].upper()82                if 'alias_symbol' in gene_info:83                    gene.alt_symbols = [84                        x.upper() for x in gene_info['alias_symbol']85                    ]86        else:87            for child in assoc.children:88                update_association(child)89    for reaction in model.reactions.values():90        if reaction.gene_associations is not None:91            update_association(reaction.gene_associations)92def load_mgi():93    """94    Loads the ortho2human, ortho2mouse dictionaries95    from the MGI exported file96    """97    ortho2mouse = defaultdict(set)98    ortho2human = defaultdict(set)99    mgi_file = os.path.join(100        RESOURCE_DIR, "Genes", "HOM_MouseHumanSequence.rpt.gz")101    data = pd.read_csv(mgi_file, sep="\t")102    hgs = data.loc[data['Common Organism Name'] == 'human']103    mgs = data.loc[data['Common Organism Name'] == 'mouse, laboratory']104    for ortho_id, hg in zip(hgs['HomoloGene ID'], hgs['Symbol']):105        ortho2human[ortho_id].add(hg.upper())106    for ortho_id, mg in zip(mgs['HomoloGene ID'], mgs['Symbol']):107        ortho2mouse[ortho_id].add(mg.upper())108    return ortho2human, ortho2mouse109def convert_species(model, target_species):110    if target_species == "homo_sapiens":111        return  # Nothing to do, assume input is human112    if target_species != "mus_musculus":113        raise NotImplementedError("Can only convert to mus_musculus")114    ortho2human, ortho2mouse = load_mgi()115    # Invert the human dictionary116    human2ortho = defaultdict(set)117    for ortho_id in ortho2human:118        for hg in ortho2human[ortho_id]:119            human2ortho[hg].add(ortho_id)120    # Now, recursively crawl the gene association structure121    #   and update all gene entries122    def update_association(assoc):123        if assoc.type == "gene":124            gene = assoc.gene125            if gene.name in human2ortho:126                ortho_id = human2ortho[gene.name]127                mouse_genes = set()128                for oid in ortho_id:129                    if oid in ortho2mouse:130                        mouse_genes |= ortho2mouse[oid]131                if len(mouse_genes) == 0:132                    gene.name = ""133                    gene.alt_symbols = []134                    return135                if len(mouse_genes) == 1:136                    gene.name = list(mouse_genes)[0]137                    gene.alt_symbols = []138                    return139                # About 30 human genes map to multiple mouse genes140                # Replace them with an OR association141                assoc.type = 'or'142                assoc.gene = None143                assoc.children = []144                for mg in mouse_genes:145                    new_gene = Gene()146                    new_gene.id = mg147                    new_gene.name = mg148                    new_assoc = Association()149                    new_assoc.type = 'gene'150                    new_assoc.gene = new_gene151                    assoc.children.append(new_assoc)152        else:153            for child in assoc.children:154                update_association(child)155    for reaction in model.reactions.values():156        if reaction.gene_associations is not None:...

lambda_function.py

Source:lambda_function.py

...42    else:43        if association_id is not None:44            if state == running:45                print("Updating SSM State Manager Association: {}".format(association_id))46                update_association(client, association_id, instance_association_name)47            elif state == terminated:48                print("Deleting SSM State Manager Association: {}".format(association_id))49                delete_association(client, association_id)50        else:51            print("Association does not exist: {}".format(instance_association_name))52def delete_association(client, association_id):53    response = client.delete_association(54        AssociationId=association_id55    )56    if response["ResponseMetadata"]["HTTPStatusCode"] == 200:57        print("AssociationId: {} was successfully deleted.".format(association_id))58    else:59        print("And error occurred while deleting the Association.")60def update_association(client, association_id, instance_association_name):61    response = client.update_association(62        AssociationId=association_id,63        AssociationName=instance_association_name,64        Parameters=ssm_params(os.environ['update_playbook'], os.environ['code_bucket'])65    )66    association_version = response["AssociationDescription"]["AssociationVersion"]67    print("AssociationId: {} update to version: {}".format(association_id, association_version))68def create_association(client, instance_id, instance_association_name):69    response = client.create_association(70        Name="AWS-ApplyAnsiblePlaybooks",71        AssociationName=instance_association_name,72        Targets=[73            {74                'Key': "InstanceIds",75                'Values': [...

zero_one_matrix.py

Source:zero_one_matrix.py

...16                    update_recursive(start_row, start_col - 1, result[start_row][start_col] + 1)17                    update_recursive(start_row, start_col + 1, result[start_row][start_col] + 1)18                    update_recursive(start_row - 1, start_col, result[start_row][start_col] + 1)19                    update_recursive(start_row + 1, start_col, result[start_row][start_col] + 1)20        def update_association(start_row: int, start_col: int):21            if 0 <= start_row < row_limit and 0 <= start_col < col_limit:22                if mat[start_row][start_col] == 0:23                    return24                if enqueued[start_row][start_col]:25                    return26                queue.append((start_row, start_col))27                result[start_row][start_col] = 128                enqueued[start_row][start_col] = True29        for row_index in range(row_limit):30            for col_index in range(col_limit):31                if mat[row_index][col_index] == 0:32                    result[row_index][col_index] = 033                    update_association(row_index, col_index - 1)34                    update_association(row_index, col_index + 1)35                    update_association(row_index - 1, col_index)36                    update_association(row_index + 1, col_index)37        while queue:38            cell = queue.popleft()39            update_recursive(cell[0] + 1, cell[1], 2)40            update_recursive(cell[0] - 1, cell[1], 2)41            update_recursive(cell[0], cell[1] + 1, 2)42            update_recursive(cell[0], cell[1] - 1, 2)...

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