Best Python code snippet using localstack_python
template_deployer.py
Source:template_deployer.py
...1039 def update_stack(self, new_stack):1040 self.stack.set_stack_status("UPDATE_IN_PROGRESS")1041 # apply changes1042 self.apply_changes(self.stack, new_stack, stack_name=self.stack.stack_name, action="UPDATE")1043 self.stack.set_time_attribute("LastUpdatedTime")1044 def delete_stack(self):1045 if not self.stack:1046 return1047 self.stack.set_stack_status("DELETE_IN_PROGRESS")1048 stack_resources = list(self.stack.resources.values())1049 resources = {r["LogicalResourceId"]: clone_safe(r) for r in stack_resources}1050 for key, resource in resources.items():1051 resource["Properties"] = resource.get("Properties", clone_safe(resource))1052 resource["ResourceType"] = resource.get("ResourceType") or resource.get("Type")1053 for resource_id, resource in resources.items():1054 # TODO: cache condition value in resource details on deployment and use cached value here1055 if evaluate_resource_condition(self, resource):1056 delete_resource(self, resource_id)1057 self.stack.set_resource_status(resource_id, "DELETE_COMPLETE")1058 # update status1059 self.stack.set_stack_status("DELETE_COMPLETE")1060 self.stack.set_time_attribute("DeletionTime")1061 # ----------------------------1062 # DEPENDENCY RESOLUTION UTILS1063 # ----------------------------1064 def is_deployable_resource(self, resource):1065 resource_type = get_resource_type(resource)1066 entry = get_deployment_config(resource_type)1067 if entry is None and resource_type not in ["Parameter", None]:1068 resource_str = dump_resource_as_json(resource)1069 LOG.warning(f'Unable to deploy resource type "{resource_type}": {resource_str}')1070 return bool(entry and entry.get(ACTION_CREATE))1071 def is_deployed(self, resource):1072 resource_status = {}1073 resource_id = resource["LogicalResourceId"]1074 details = retrieve_resource_details(resource_id, resource_status, stack=self.stack)...
utils.py
Source:utils.py
...29 def from_img(cls, img_c, voxel_spacing):30 coords = (img_c[2] * voxel_spacing[2], img_c[1] * voxel_spacing[1],31 img_c[0] * voxel_spacing[0])32 return cls(coords, voxel_spacing)33def set_time_attribute(tree, time_interval):34 '''Set a new "time" attribute = "mamut_t" x time_interval'''35 for n, attr in tree.nodes:36 attr['time'] = attr['mamut_t'] * time_interval37def label_split_cells(tree):38 '''Labels splitting cells as 1 before and as 2 after split'''39 tree.set_all_nodes_attribute('split', 0)40 for n_id, n_attr in tree.nodes:41 successors = list(tree.successors(n_id))42 if len(successors) > 1:43 n_attr['split'] = 144 for nid in successors:45 tree.nodes[nid]['split'] = 246def compute_split_orientation(tree):47 '''compute abs(cos(alpha)) where alpha is the angle between segment ...
tree_tasks.py
Source:tree_tasks.py
...38 os.makedirs(self.temp_output_dir, exist_ok=True)39 # parse mamut tree40 tree = construct_tree(self.input()['xml_tree'].path)41 # calculate all implemented features42 set_time_attribute(tree, experiment_config['time_interval'])43 label_merge_cells(tree)44 label_merged_tracks(tree)45 compute_timepoint_ids(tree)46 compute_dendrogram_coordinates(tree)47 label_split_cells(tree)48 label_generation(tree)49 label_cell_id(tree)50 calculate_displacement(tree)51 for es, ee, e_attr in tree.edges:52 # copy displacement attribute to end node53 tree.nodes[ee]['displacement'] = e_attr['displacement']54 max_generation = max(55 tree.get_all_nodes_attribute('generation').values())56 for gen in range(1, max_generation + 1):...
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