KaneAI - World’s First E2E Software Testing Agent.Book a Demo Join TestMu Conference

How to use call_safe method in localstack

Best Python code snippet using localstack_python

variant.py

Source:variant.py

...110    parsed_variant["genetic_models"] = parse_genetic_models(111        variant.INFO.get("GeneticModels"), genmod_key112    )113    ################# Add autozygosity calls if present #################114    parsed_variant["azlength"] = call_safe(int, variant.INFO.get("AZLENGTH"))115    parsed_variant["azqual"] = call_safe(float, variant.INFO.get("AZQUAL"))116    ################ Add STR info if present ################117    # repeat id generally corresponds to gene symbol118    parsed_variant["str_repid"] = call_safe(str, variant.INFO.get("REPID"))119    # repeat unit - used e g in PanelApp naming of STRs120    parsed_variant["str_ru"] = call_safe(str, variant.INFO.get("RU"))121    # repeat unit - used e g in PanelApp naming of STRs122    parsed_variant["str_display_ru"] = call_safe(str, variant.INFO.get("DisplayRU"))123    # repeat ref - reference copy number124    parsed_variant["str_ref"] = call_safe(int, variant.INFO.get("REF"))125    # repeat len - number of repeats found in case126    parsed_variant["str_len"] = call_safe(int, variant.INFO.get("RL"))127    # str status - this indicates the severity of the expansion level128    parsed_variant["str_status"] = call_safe(str, variant.INFO.get("STR_STATUS"))129    # str normal max - max number of repeats to call an STR variant normal130    parsed_variant["str_normal_max"] = call_safe(int, variant.INFO.get("STR_NORMAL_MAX"))131    # str pathological min - min number of repeats to call an STR variant pathologic132    parsed_variant["str_pathologic_min"] = call_safe(int, variant.INFO.get("STR_PATHOLOGIC_MIN"))133    # str disease - disease name annotation134    parsed_variant["str_disease"] = call_safe(str, variant.INFO.get("Disease"))135    # str disease inheritance mode string annotation136    parsed_variant["str_inheritance_mode"] = call_safe(str, variant.INFO.get("InheritanceMode"))137    # str source dict with display string, source type and entry id138    set_source(parsed_variant, variant)139    parsed_variant["str_swegen_mean"] = call_safe(float, variant.INFO.get("SweGenMean"))140    parsed_variant["str_swegen_std"] = call_safe(float, variant.INFO.get("SweGenStd"))141    ################# Add somatic info ##################142    parsed_variant["somatic_score"] = call_safe(int, variant.INFO.get("SOMATICSCORE"))143    ################# Add mitomap info, from HmtNote #################144    set_mitomap_associated_diseases(parsed_variant, variant)145    ################# Add HmtVar variant id, from HmtNote #################146    add_hmtvar(parsed_variant, variant)147    ### Add custom info148    parsed_variant["custom"] = parse_custom_data(variant.INFO.get("SCOUT_CUSTOM"))149    ### Add gene and transcript information150    parsed_transcripts = add_gene_and_transcript_info(parsed_variant, variant, vep_header)151    ################# Add clinsig prediction #################152    set_clnsig(parsed_variant, variant, parsed_transcripts)153    ################# Add the frequencies #################154    frequencies = parse_frequencies(variant, parsed_transcripts)155    parsed_variant["frequencies"] = frequencies156    # SNVs contain INFO field Obs, SVs contain clinical_genomics_loqusObs157    local_obs_old = variant.INFO.get("Obs") or variant.INFO.get("clinical_genomics_loqusObs")158    if local_obs_old:159        parsed_variant["local_obs_old"] = int(local_obs_old)160    # SNVs only161    parsed_variant["local_obs_hom_old"] = call_safe(int, variant.INFO.get("Hom"))162    # SVs only163    parsed_variant["local_obs_old_freq"] = call_safe(164        float, variant.INFO.get("clinical_genomics_loqusFrq")165    )166    set_local_archive_info(parsed_variant, local_archive_info)167    if local_archive_info and "Date" in local_archive_info:168        parsed_variant["local_obs_old_date"] = local_archive_info.get("Date")169    if local_archive_info and "NrCases" in local_archive_info:170        parsed_variant["local_obs_old_nr_cases"] = local_archive_info.get("NrCases")171    if local_archive_info and "Description" in local_archive_info:172        parsed_variant["local_obs_old_desc"] = local_archive_info.get("Description")173    ###################### Add severity predictions ######################174    parsed_variant["cadd_score"] = parse_cadd(variant, parsed_transcripts)175    parsed_variant["spidex"] = call_safe(float, variant.INFO.get("SPIDEX"))176    if len(parsed_transcripts) > 0:177        parsed_variant["revel_score"] = parsed_transcripts[0].get(178            "revel"179        )  # This is actually the value of REVEL_rankscore180        parsed_variant["revel"] = parsed_transcripts[0].get(181            "revel_score"182        )  # This is actually the value of REVEL_score183    ###################### Add conservation ######################184    parsed_variant["conservation"] = parse_conservations(variant, parsed_transcripts)185    parsed_variant["callers"] = parse_callers(variant, category=category)186    set_rank_result(parsed_variant, variant, rank_results_header)187    ###################### Add SV specific annotations ######################188    sv_frequencies = parse_sv_frequencies(variant)189    for key in sv_frequencies:...

internal.py

Source:internal.py

...115    def on_get(self, request):116        from localstack.utils import diagnose117        return {118            "version": {119                "image-version": call_safe(diagnose.get_docker_image_details),120                "localstack-version": call_safe(diagnose.get_localstack_version),121                "host": {122                    "kernel": call_safe(diagnose.get_host_kernel_version),123                },124            },125            "services": call_safe(diagnose.get_service_stats),126            "config": call_safe(diagnose.get_localstack_config),127            "docker-inspect": call_safe(diagnose.inspect_main_container),128            "docker-dependent-image-hashes": call_safe(diagnose.get_important_image_hashes),129            "file-tree": call_safe(diagnose.get_file_tree),130            "important-endpoints": call_safe(diagnose.resolve_endpoints),131            "logs": call_safe(diagnose.get_localstack_logs),132        }133class LocalstackResources(Router):134    """135    Router for localstack-internal HTTP resources.136    """137    def __init__(self):138        super().__init__(dispatcher=resource_dispatcher(pass_response=False))139        self.add_default_routes()140        # TODO: load routes as plugins141    def add_default_routes(self):142        from localstack.services.plugins import SERVICE_PLUGINS143        health_resource = HealthResource(SERVICE_PLUGINS)144        graph_resource = ResourceGraph()145        # two special routes for legacy support (before `/_localstack` was introduced)...

Automation Testing Tutorials

Learn to execute automation testing from scratch with LambdaTest Learning Hub. Right from setting up the prerequisites to run your first automation test, to following best practices and diving deeper into advanced test scenarios. LambdaTest Learning Hubs compile a list of step-by-step guides to help you be proficient with different test automation frameworks i.e. Selenium, Cypress, TestNG etc.