How to use apply_request_parameters method in localstack

Best Python code snippet using localstack_python

test_apigateway.py

Source: test_apigateway.py Github

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...79 self.assertEqual(None, result)80 path_args = {"/​foo/​{param1}/​baz": {}, "/​foo/​{param1}/​{param2}": {}}81 path, result = get_resource_for_path("/​foo/​bar/​baz", path_args)82 self.assertEqual("/​foo/​{param1}/​baz", path)83 def test_apply_request_parameters(self):84 integration = {85 "type": "HTTP_PROXY",86 "httpMethod": "ANY",87 "uri": "https:/​/​httpbin.org/​anything/​{proxy}",88 "requestParameters": {"integration.request.path.proxy": "method.request.path.proxy"},89 "passthroughBehavior": "WHEN_NO_MATCH",90 "timeoutInMillis": 29000,91 "cacheNamespace": "041fa782",92 "cacheKeyParameters": [],93 }94 uri = apply_request_parameters(95 uri="https:/​/​httpbin.org/​anything/​{proxy}",96 integration=integration,97 path_params={"proxy": "foo/​bar/​baz"},98 query_params={"param": "foobar"},99 )100 self.assertEqual("https:/​/​httpbin.org/​anything/​foo/​bar/​baz?param=foobar", uri)101 def test_if_request_is_valid_with_no_resource_methods(self):102 ctx = ApiInvocationContext("POST", "/​", b"", {})103 validator = RequestValidator(ctx, None)104 self.assertTrue(validator.is_request_valid())105 def test_if_request_is_valid_with_no_matching_method(self):106 ctx = ApiInvocationContext("POST", "/​", b"", {})107 ctx.resource = {"resourceMethods": {"GET": {}}}108 validator = RequestValidator(ctx, None)...

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g_variants.py

Source: g_variants.py Github

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...63 value=[value[1]],64 operator=Operator.LESS_EQUAL65 ))66 return filters67def apply_request_parameters(query: Dict[str, List[dict]], qparams: RequestParams):68 LOG.debug("Request parameters len = {}".format(len(qparams.query.request_parameters)))69 if len(qparams.query.request_parameters) > 0 and "$and" not in query:70 query["$and"] = []71 for k, v in qparams.query.request_parameters.items():72 if k == "start":73 if isinstance(v, str):74 v = v.split(',')75 filters = generate_position_filter_start(k, v)76 for filter in filters:77 query["$and"].append(apply_alphanumeric_filter({}, filter))78 elif k == "end":79 if isinstance(v, str):80 v = v.split(',')81 filters = generate_position_filter_end(k, v)82 for filter in filters:83 query["$and"].append(apply_alphanumeric_filter({}, filter))84 elif k == "variantMinLength" or k == "variantMaxLength" or k == "mateName":85 continue86 else:87 query["$and"].append(apply_alphanumeric_filter({}, AlphanumericFilter(88 id=VARIANTS_PROPERTY_MAP[k],89 value=v90 )))91 return query92def get_variants(entry_id: Optional[str], qparams: RequestParams):93 query = apply_request_parameters({}, qparams)94 query = apply_filters(query, qparams.query.filters)95 schema = DefaultSchemas.GENOMICVARIATIONS96 count = get_count(client.beacon.genomicVariations, query)97 docs = get_documents(98 client.beacon.genomicVariations,99 query,100 qparams.query.pagination.skip,101 qparams.query.pagination.limit102 )103 return schema, count, docs104def get_variant_with_id(entry_id: Optional[str], qparams: RequestParams):105 query = {"$and": [{"variantInternalId": entry_id}]}106 query = apply_request_parameters(query, qparams)107 query = apply_filters(query, qparams.query.filters)108 schema = DefaultSchemas.GENOMICVARIATIONS109 count = get_count(client.beacon.genomicVariations, query)110 docs = get_documents(111 client.beacon.genomicVariations,112 query,113 qparams.query.pagination.skip,114 qparams.query.pagination.limit115 )116 return schema, count, docs117def get_biosamples_of_variant(entry_id: Optional[str], qparams: RequestParams):118 query = {"$and": [{"variantInternalId": entry_id}]}119 query = apply_request_parameters(query, qparams)120 query = apply_filters(query, qparams.query.filters)121 biosample_ids = client.beacon.genomicVariations \122 .find_one(query, {"caseLevelData.biosamplesId": 1, "_id": 0})123 biosample_ids = [ r for r in biosample_ids ] if biosample_ids else []124 query = apply_request_parameters({}, qparams)125 query = query_ids(query, biosample_ids)126 query = apply_filters(query, qparams.query.filters)127 schema = DefaultSchemas.BIOSAMPLES128 count = get_count(client.beacon.biosamples, query)129 docs = get_documents(130 client.beacon.biosamples,131 query,132 qparams.query.pagination.skip,133 qparams.query.pagination.limit134 )135 return schema, count, docs136def get_individuals_of_variant(entry_id: Optional[str], qparams: RequestParams):137 query = {"$and": [{"variantInternalId": entry_id}]}138 query = apply_request_parameters(query, qparams)139 query = apply_filters(query, qparams.query.filters)140 individual_ids = client.beacon.genomicVariations \141 .find(query)142 individual_ids = [ r["caseLevelData"]["individualId"] for r in individual_ids] if individual_ids else []143 query = apply_request_parameters({}, qparams)144 query = query_ids(query, individual_ids)145 query = apply_filters(query, qparams.query.filters)146 schema = DefaultSchemas.INDIVIDUALS147 count = get_count(client.beacon.individuals, query)148 docs = get_documents(149 client.beacon.individuals,150 query,151 qparams.query.pagination.skip,152 qparams.query.pagination.limit153 )154 return schema, count, docs155def get_runs_of_variant(entry_id: Optional[str], qparams: RequestParams):156 query = {"$and": [{"variantInternalId": entry_id}]}157 query = apply_request_parameters(query, qparams)158 query = apply_filters(query, qparams.query.filters)159 run_ids = client.beacon.genomicVariations \160 .find_one(query, {"caseLevelData.runId": 1, "_id": 0})161 run_ids = [ r for r in run_ids] if run_ids else []162 query = apply_request_parameters({}, qparams)163 query = query_ids(query, run_ids)164 query = apply_filters(query, qparams.query.filters)165 schema = DefaultSchemas.RUNS166 count = get_count(client.beacon.runs, query)167 docs = get_documents(168 client.beacon.runs,169 query,170 qparams.query.pagination.skip,171 qparams.query.pagination.limit172 )173 return schema, count, docs174def get_analyses_of_variant(entry_id: Optional[str], qparams: RequestParams):175 query = {"$and": [{"variantInternalId": entry_id}]}176 query = apply_request_parameters(query, qparams)177 query = apply_filters(query, qparams.query.filters)178 analysis_ids = client.beacon.genomicVariations \179 .find_one(query, {"caseLevelData.analysisId": 1, "_id": 0})180 analysis_ids = [r for r in analysis_ids] if analysis_ids else []181 query = apply_request_parameters({}, qparams)182 query = query_ids(query, analysis_ids)183 query = apply_filters(query, qparams.query.filters)184 schema = DefaultSchemas.ANALYSES185 count = get_count(client.beacon.analyses, query)186 docs = get_documents(187 client.beacon.analyses,188 query,189 qparams.query.pagination.skip,190 qparams.query.pagination.limit191 )...

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