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How to use apply_request_parameters method in localstack

Best Python code snippet using localstack_python

test_apigateway.py

Source:test_apigateway.py

...79        self.assertEqual(None, result)80        path_args = {"/foo/{param1}/baz": {}, "/foo/{param1}/{param2}": {}}81        path, result = get_resource_for_path("/foo/bar/baz", path_args)82        self.assertEqual("/foo/{param1}/baz", path)83    def test_apply_request_parameters(self):84        integration = {85            "type": "HTTP_PROXY",86            "httpMethod": "ANY",87            "uri": "https://httpbin.org/anything/{proxy}",88            "requestParameters": {"integration.request.path.proxy": "method.request.path.proxy"},89            "passthroughBehavior": "WHEN_NO_MATCH",90            "timeoutInMillis": 29000,91            "cacheNamespace": "041fa782",92            "cacheKeyParameters": [],93        }94        uri = apply_request_parameters(95            uri="https://httpbin.org/anything/{proxy}",96            integration=integration,97            path_params={"proxy": "foo/bar/baz"},98            query_params={"param": "foobar"},99        )100        self.assertEqual("https://httpbin.org/anything/foo/bar/baz?param=foobar", uri)101    def test_if_request_is_valid_with_no_resource_methods(self):102        ctx = ApiInvocationContext("POST", "/", b"", {})103        validator = RequestValidator(ctx, None)104        self.assertTrue(validator.is_request_valid())105    def test_if_request_is_valid_with_no_matching_method(self):106        ctx = ApiInvocationContext("POST", "/", b"", {})107        ctx.resource = {"resourceMethods": {"GET": {}}}108        validator = RequestValidator(ctx, None)...

g_variants.py

Source:g_variants.py

...63            value=[value[1]],64            operator=Operator.LESS_EQUAL65        ))66    return filters67def apply_request_parameters(query: Dict[str, List[dict]], qparams: RequestParams):68    LOG.debug("Request parameters len = {}".format(len(qparams.query.request_parameters)))69    if len(qparams.query.request_parameters) > 0 and "$and" not in query:70        query["$and"] = []71    for k, v in qparams.query.request_parameters.items():72        if k == "start":73            if isinstance(v, str):74                v = v.split(',')75            filters = generate_position_filter_start(k, v)76            for filter in filters:77                query["$and"].append(apply_alphanumeric_filter({}, filter))78        elif k == "end":79            if isinstance(v, str):80                v = v.split(',')81            filters = generate_position_filter_end(k, v)82            for filter in filters:83                query["$and"].append(apply_alphanumeric_filter({}, filter))84        elif k == "variantMinLength" or k == "variantMaxLength" or k == "mateName":85            continue86        else:87            query["$and"].append(apply_alphanumeric_filter({}, AlphanumericFilter(88                id=VARIANTS_PROPERTY_MAP[k],89                value=v90            )))91    return query92def get_variants(entry_id: Optional[str], qparams: RequestParams):93    query = apply_request_parameters({}, qparams)94    query = apply_filters(query, qparams.query.filters)95    schema = DefaultSchemas.GENOMICVARIATIONS96    count = get_count(client.beacon.genomicVariations, query)97    docs = get_documents(98        client.beacon.genomicVariations,99        query,100        qparams.query.pagination.skip,101        qparams.query.pagination.limit102    )103    return schema, count, docs104def get_variant_with_id(entry_id: Optional[str], qparams: RequestParams):105    query = {"$and": [{"variantInternalId": entry_id}]}106    query = apply_request_parameters(query, qparams)107    query = apply_filters(query, qparams.query.filters)108    schema = DefaultSchemas.GENOMICVARIATIONS109    count = get_count(client.beacon.genomicVariations, query)110    docs = get_documents(111        client.beacon.genomicVariations,112        query,113        qparams.query.pagination.skip,114        qparams.query.pagination.limit115    )116    return schema, count, docs117def get_biosamples_of_variant(entry_id: Optional[str], qparams: RequestParams):118    query = {"$and": [{"variantInternalId": entry_id}]}119    query = apply_request_parameters(query, qparams)120    query = apply_filters(query, qparams.query.filters)121    biosample_ids = client.beacon.genomicVariations \122        .find_one(query, {"caseLevelData.biosamplesId": 1, "_id": 0})123    biosample_ids = [ r for r in biosample_ids ] if biosample_ids else []124    query = apply_request_parameters({}, qparams)125    query = query_ids(query, biosample_ids)126    query = apply_filters(query, qparams.query.filters)127    schema = DefaultSchemas.BIOSAMPLES128    count = get_count(client.beacon.biosamples, query)129    docs = get_documents(130        client.beacon.biosamples,131        query,132        qparams.query.pagination.skip,133        qparams.query.pagination.limit134    )135    return schema, count, docs136def get_individuals_of_variant(entry_id: Optional[str], qparams: RequestParams):137    query = {"$and": [{"variantInternalId": entry_id}]}138    query = apply_request_parameters(query, qparams)139    query = apply_filters(query, qparams.query.filters)140    individual_ids = client.beacon.genomicVariations \141        .find(query)142    individual_ids = [ r["caseLevelData"]["individualId"] for r in individual_ids] if individual_ids else []143    query = apply_request_parameters({}, qparams)144    query = query_ids(query, individual_ids)145    query = apply_filters(query, qparams.query.filters)146    schema = DefaultSchemas.INDIVIDUALS147    count = get_count(client.beacon.individuals, query)148    docs = get_documents(149        client.beacon.individuals,150        query,151        qparams.query.pagination.skip,152        qparams.query.pagination.limit153    )154    return schema, count, docs155def get_runs_of_variant(entry_id: Optional[str], qparams: RequestParams):156    query = {"$and": [{"variantInternalId": entry_id}]}157    query = apply_request_parameters(query, qparams)158    query = apply_filters(query, qparams.query.filters)159    run_ids = client.beacon.genomicVariations \160        .find_one(query, {"caseLevelData.runId": 1, "_id": 0})161    run_ids = [ r for r in run_ids] if run_ids else []162    query = apply_request_parameters({}, qparams)163    query = query_ids(query, run_ids)164    query = apply_filters(query, qparams.query.filters)165    schema = DefaultSchemas.RUNS166    count = get_count(client.beacon.runs, query)167    docs = get_documents(168        client.beacon.runs,169        query,170        qparams.query.pagination.skip,171        qparams.query.pagination.limit172    )173    return schema, count, docs174def get_analyses_of_variant(entry_id: Optional[str], qparams: RequestParams):175    query = {"$and": [{"variantInternalId": entry_id}]}176    query = apply_request_parameters(query, qparams)177    query = apply_filters(query, qparams.query.filters)178    analysis_ids = client.beacon.genomicVariations \179        .find_one(query, {"caseLevelData.analysisId": 1, "_id": 0})180    analysis_ids = [r for r in analysis_ids] if analysis_ids else []181    query = apply_request_parameters({}, qparams)182    query = query_ids(query, analysis_ids)183    query = apply_filters(query, qparams.query.filters)184    schema = DefaultSchemas.ANALYSES185    count = get_count(client.beacon.analyses, query)186    docs = get_documents(187        client.beacon.analyses,188        query,189        qparams.query.pagination.skip,190        qparams.query.pagination.limit191    )...

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