KaneAI - World’s First E2E Software Testing Agent.Book a Demo Join TestMu Conference

How to use _parse_structure method in localstack

Best Python code snippet using localstack_python

app.py

Source:app.py

...75        # we don't have anomalies in the conf76        anomalies = [lambda x: x for i in range(structure.W.shape[0])]77    logging.debug(anomalies)78    return structure, anomalies, m079def _parse_structure(conf):80    structures = []81    m0 = []82    anomalies = []83    for structure in conf:84        _structure, _anomalies, _m0 = _parse_component(structure)85        m0.extend(_m0)86        anomalies.extend(_anomalies)87        structures.append(_structure)88    m0 = np.array(m0)89    C0 = np.eye(len(m0))90    return reduce((lambda x, y: x + y), structures), m0, C0, anomalies91def _parse_composite(conf):92    models = []93    prior_mean = []94    anomaly_vector = []95    for element in conf:96        if 'replicate' in element:97            structure, m0, C0, anomalies = _parse_structure(98                element['structure'])99            prior_mean.extend([m0] * element['replicate'])100            anomaly_vector.extend(anomalies * element['replicate'])101            model = _parse_observations(element['observations'], structure)102            models.extend([model] * element['replicate'])103        else:104            structure, m0, C0, anomalies = _parse_structure(105                element['structure'])106            prior_mean.extend(m0)107            anomaly_vector.extend(anomalies)108            model = _parse_observations(element['observations'], structure)109            models.append(model)110    print(models)111    model = CompositeTransformer(*models)112    m0 = np.array(prior_mean)113    C0 = np.eye(len(m0))114    return model, m0, C0, anomaly_vector115def _parse_observations(obs, structure):116    if obs['type'] == 'continuous':117        model = NormalDLM(structure=structure, V=obs['noise'])118    elif obs['type'] == 'discrete':119        model = PoissonDLM(structure=structure)120    elif obs['type'] == 'categorical':121        if 'values' in obs:122            values = obs['values'].split(',')123            model = BinomialTransformer(structure=structure, source=values)124        elif 'categories' in obs:125            model = BinomialDLM(structure=structure,126                                categories=obs['categories'])127        else:128            raise ValueError("Categorical models must have either 'values' "129                             "or 'categories'")130    else:131        raise ValueError("Model type {} is not valid".format(obs['type']))132    return model133def parse_configuration(conf):134    """135    Parse a YAML configuration string into an state-space model136    :param conf:137    :return: A state-space model138    """139    if 'compose' in conf:140        model, m0, C0, anomalies = _parse_composite(conf['compose'])141    else:142        structure, m0, C0, anomalies = _parse_structure(conf['structure'])143        model = _parse_observations(conf['observations'], structure)144    state = mvn(m0, C0).rvs()145    period = float(conf['period'])146    name = conf['name']147    return model, state, period, name, anomalies148def build_message(name, value):149    return json.dumps({150        'name': name,151        'value': value152    }).encode()153def main(args):154    logging.basicConfig(level=args.logging)155    logging.info('brokers={}'.format(args.brokers))156    logging.info('topic={}'.format(args.topic))...

parse_course.py

Source:parse_course.py

...65            content['parent'] = parent_id66        for attr in root.attrib:67            content[attr] = root.attrib.get(attr)68        return content69    def _parse_structure(self, label, instance_id, usage_id, parent_id=None):70        file_name = "{}/{}/{}.xml".format(self.directory, label, instance_id)71        root = ElementTree.parse(file_name).getroot()72        content = self._populate_attributes(root, parent_id)73        if instance_id:74            content['id'] = instance_id75            content['usage_id'] = usage_id76        for child in root:77            try:78                child_parser = getattr(EdXMLParser, '_parse_' + child.tag)79            except AttributeError:80                child_parser = getattr(EdXMLParser, '_parse_leaf')81            content['children'] = content.get('children', [])82            child = child_parser(self, child, instance_id, child.tag)83            content['children'].append(child)84            content['score'] = content['score'] + child['score']85        return content86    def _calculate_usage_id(self, instance_id, label):87        # This method returns a usage ID for a split-mongo installation. For88        # the mongo DB in the Devstack or Full Stack installations, use:89        # return "i4x:;_;_{};_{};_{}".format(self.usage_prefix.replace('/', ';_'), label, instance_id)90        return "block-v1:{}+{}+{}+type@{}+block@{}".format(91            self.org,92            self.course,93            self.url_name,94            label,95            instance_id96        )97    def _parse_course_xml(self):98        file_name = "{}/course.xml".format(self.directory)99        root = ElementTree.parse(file_name).getroot()100        self.url_name = root.attrib.get('url_name')101        self.course = root.attrib.get('course')102        self.org = root.attrib.get('org')103    def _parse_course(self):104        self._parse_course_xml()105        usage_id = self._calculate_usage_id(self.url_name, 'course')106        self.parsed_course = self._parse_structure('course', self.url_name, usage_id)107    def _parse_chapter(self, element, parent_id, tag):108        instance_id = self._get_instance_id(element)109        usage_id = self._calculate_usage_id(element.attrib.get('url_name'), tag)110        return self._parse_structure(tag, instance_id=instance_id, usage_id=usage_id, parent_id=parent_id)111    def _parse_sequential(self, element, parent_id, tag):112        instance_id = self._get_instance_id(element)113        usage_id = self._calculate_usage_id(element.attrib.get('url_name'), tag)114        return self._parse_structure(tag, instance_id=instance_id, usage_id=usage_id, parent_id=parent_id)115    def _parse_vertical(self, element, parent_id, tag):116        instance_id = self._get_instance_id(element)117        usage_id = self._calculate_usage_id(element.attrib.get('url_name'), tag)118        return self._parse_structure(tag, instance_id=instance_id, usage_id=usage_id, parent_id=parent_id)119    def _parse_problem(self, element, parent_id, tag):120        if element.attrib.get('display_name'):121            content = self._populate_attributes(element, parent_id)122            content['score'] = 1123        else:124            instance_id = self._get_instance_id(element)125            # instance_id = element.attrib.get('url_name')126            file_name = "{}/problem/{}.xml".format(self.directory, instance_id)127            root = ElementTree.parse(file_name).getroot()128            content = self._populate_attributes(root, parent_id)129            content['id'] = instance_id130            content['usage_id'] = self._calculate_usage_id(content['id'], tag)131            score = 0132            score += len(root.findall('.//coderesponse'))...

pdb_parse.py

Source:pdb_parse.py

...19        for line in f:20            content.append(line.decode("utf-8"))21    temp_fp = StringIO("".join(content))22    return temp_fp23def _parse_structure(24    parser: Union[PDBParser, MMCIFParser], name: str, file_path: str25) -> Structure:26    """Parse a .pdb or .cif file into a structure object.27    The file can be gzipped."""28    if pd.isnull(file_path):29        return None30    if file_path.endswith(".gz"):31        structure = parser.get_structure(name, gunzip_to_ram(file_path))32    else:  # not gzipped33        structure = parser.get_structure(name, file_path)34    return structure35parse_pdb_structure = _parse_structure  # for backward compatiblity36def parse_structure(37    pdb_parser: PDBParser, cif_parser: MMCIFParser, name: str, file_path: str38) -> Structure:39    """Parse a .pdb file or .cif file into a structure object.40    The file can be gzipped."""41    if file_path.rstrip(".gz").endswith("pdb"):42        return _parse_structure(pdb_parser, name, file_path)43    else:44        return _parse_structure(cif_parser, name, file_path)45def three_to_one_standard(res: Residue) -> str:46    """Encode non-standard AA to X."""47    if not is_aa(res, standard=True):48        return "X"49    return three_to_one(res)50def is_aa_by_target_atoms(res: Residue) -> bool:51    """Tell if a Residue object is AA"""52    target_atoms = ["N", "CA", "C", "O"]53    for atom in target_atoms:54        try:55            res[atom]56        except KeyError:57            return False58    return True...

Automation Testing Tutorials

Learn to execute automation testing from scratch with LambdaTest Learning Hub. Right from setting up the prerequisites to run your first automation test, to following best practices and diving deeper into advanced test scenarios. LambdaTest Learning Hubs compile a list of step-by-step guides to help you be proficient with different test automation frameworks i.e. Selenium, Cypress, TestNG etc.