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How to use setup_system method in lisa

Best Python code snippet using lisa_python

package.py

Source:package.py

1from os import system2from linux_profile.base.system import System3class HandlerPackage(System):4    def setup_system(5            self,6            sudo: bool = True,7            parameter: list = list()):8        sudo = "sudo" if sudo else ""9        parameter = " ".join(parameter)10        command = [sudo, self.type, self.command, self.name, parameter]11        system(" ".join(command).replace("  ", " "))12    def setup_apt_get(self):13        if self.command == 'install':14            self.setup_system(parameter=["-y"])15        if self.command == 'uninstall':16            self.command = 'remove'17            self.setup_system(parameter=["-y"])18    def setup_apt(self):19        if self.command == 'install':20            self.setup_system(parameter=["-y"])21        if self.command == 'uninstall':22            self.command = 'remove'23            self.setup_system(parameter=["-y"])24    def setup_snap(self):25        if self.command == 'uninstall':26            self.command = 'remove'27        self.setup_system()28    def setup_yum(self):29        if self.command == 'uninstall':30            self.command = 'remove'31        self.setup_system()32    def setup_dnf(self):33        if self.command == 'uninstall':34            self.command = 'remove'35        self.setup_system()36    def setup_pacman(self):37        if self.command == 'install':38            self.command = '-S'39        if self.command == 'uninstall':40            self.command = '-R'41            self.setup_system()42    def setup_zypper(self):43        if self.command == 'uninstall':44            self.command = 'rm'45        self.setup_system()46    def setup_spack(self):47        self.setup_system()48    def setup_brew(self):49        if self.command == 'uninstall':50            self.command = 'remove'51        self.setup_system()52    def setup_pip(self):53        if self.command == 'install':54            self.setup_system(sudo=False)55        if self.command == 'uninstall':56            self.setup_system(sudo=False, parameter=[" -y"])57    def setup_deb(self):58        path_file = f"{self.temp}/{self.file}"59        system(f"curl {self.url} --output {path_file}")60        system(f"sudo dpkg -i {path_file}")61        system("sudo apt install -f")62        # Removing the temporary installation file63        system(f"sudo rm -r {path_file}")64    def setup_shell(self):65        path_file = f"{self.temp}/{self.name}"66        system(f"curl {self.url} --output {path_file}")67        system(f"chmod +x {path_file}")68        system(path_file)69        # Removing the temporary installation file70        system(f"sudo rm -r {path_file}")

test_get_kstoc.py

Source:test_get_kstoc.py

1"""2    Tests for kstoc function3"""4import numpy as np5import pytest6from cayenne.utils import Na, get_kstoc7from cayenne.simulation import Simulation8@pytest.mark.usefixtures("setup_system")9class TestKstoc:10    """11        Test the output of `get_kstoc`.12    """13    def test_100(self, setup_system):14        """ A -> ..."""15        k_det, volume = setup_system16        V_r = np.array([[1], [0], [0]])17        k_stoc = get_kstoc(V_r, k_det, volume, chem_flag=True)18        assert k_stoc == k_det19    def test_110(self, setup_system):20        """ A + B -> ..."""21        k_det, volume = setup_system22        V_r = np.array([[1], [1], [0]])23        k_stoc = get_kstoc(V_r, k_det, volume, chem_flag=True)24        assert np.isclose(k_stoc, k_det / (Na * volume))25    def test_111(self, setup_system):26        """ A + B + C -> ..."""27        k_det, volume = setup_system28        V_r = np.array([[1], [1], [1]])29        k_stoc = get_kstoc(V_r, k_det, volume, chem_flag=True)30        assert np.isclose(k_stoc, k_det / (Na * volume) ** 2)31    def test_200(self, setup_system):32        """ A + A -> ..."""33        k_det, volume = setup_system34        V_r = np.array([[2], [0], [0]])35        k_stoc = get_kstoc(V_r, k_det, volume, chem_flag=True)36        assert np.isclose(k_stoc, k_det * 2 / (Na * volume))37    def test_210(self, setup_system):38        """ A + A + B -> ..."""39        k_det, volume = setup_system40        V_r = np.array([[2], [1], [0]])41        k_stoc = get_kstoc(V_r, k_det, volume, chem_flag=True)42        assert np.isclose(k_stoc, k_det * 2 / (Na * volume) ** 2)43    def test_300(self, setup_system):44        """ A + A + A -> ..."""45        k_det, volume = setup_system46        V_r = np.array([[3], [0], [0]])47        k_stoc = get_kstoc(V_r, k_det, volume, chem_flag=True)48        assert np.isclose(k_stoc, k_det * 6 / (Na * volume) ** 2)49    def test_chemflag(self, setup_system):50        """ Chemical and non-chemical system """51        k_det, volume = setup_system52        V_r = np.array([[3], [0], [0]])53        k_stoc = get_kstoc(V_r, k_det, volume, chem_flag=True)54        assert np.isclose(k_stoc, k_det * 6 / (Na * volume) ** 2)55        k_det, volume = setup_system56        V_r = np.array([[3], [0], [0]])57        k_stoc = get_kstoc(V_r, k_det, volume, chem_flag=False)...

script.py

Source:script.py

1from os import system2from linux_profile.base.system import System3from linux_profile.utils.file import write_file4class HandlerScript(System):5    def setup_system(self, shebang: str):6        path_file = f"{self.temp}/{self.name}"7        for index, line in enumerate(self.body):8            if index == 0:9                system(f"echo '{shebang}' > {path_file}")10            write_file(11                content=line + '\n',12                path_file=path_file,13                mode='a'14            )15        system(f"chmod +x {path_file}")16        system(path_file)17    def setup_shell(self):18        shebang = self.shebang if self.shebang else '#!/bin/bash'19        self.setup_system(shebang=shebang)20    def setup_python(self):21        shebang = self.shebang if self.shebang else '#!/usr/bin/env python'22        self.setup_system(shebang=shebang)23    def setup_python3(self):24        shebang = self.shebang if self.shebang else '#!/usr/bin/env python3'25        self.setup_system(shebang=shebang)26    def setup_ruby(self):27        shebang = self.shebang if self.shebang else '#!/usr/bin/env ruby'...

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