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How to use get_tool_path method in lisa

Best Python code snippet using lisa_python

__init__.py

Source:__init__.py

...41        "A hacky way of finding the metadata schema path"42        parent = os.path.dirname(os.path.dirname(os.path.realpath(__file__)))43        path = os.path.join(parent, "media_probe_schema.json")44        return path45    def get_tool_path(self, tool):46        "Get the executable path for the tool in question"47        if tool not in self.paths or not os.access(self.paths[tool], os.X_OK):48            # try to find the tool and update the path49            p = shutil.which(tool)50            if p is None:51                raise FileNotFoundError(f"Cannot find executable for {tool}")52            self.paths[tool] = p53        return self.paths[tool]54    def probe(self, file):55        "Run all of the probes on a file"56        data = {'container': {'name': os.path.basename(file),57                            'size': os.path.getsize(file),58                            'time': os.path.getmtime(file)59                        },60                'streams': {},61                'tags': {}62                }63        if os.path.isfile(file):64            data['container']['type'] = 'file'65        elif os.path.isdir(file):66            data['container']['type'] = 'dir'67        else:68            data['container']['type'] = 'other'69        mime = self.get_mime_type(file)70        data['container']['mime_type'] = mime71        72        # run the probes73        self.probe_time_based_media(file, data)74        self.probe_image_media(file, data)75        self.probe_text(file, data)76        self.probe_document(file, data)77        return data78    def get_mime_type(self, file):79        """80        Use the file command to get the mime type for a file81        """    82        result = subprocess.run([self.get_tool_path('file'), '--brief', '--mime-type', '--dereference', file], stdout=subprocess.PIPE, check=True)83        mime = str(result.stdout, 'utf-8').rstrip()84        # There are some weird corner cases we'd like to pick up...85        # * pick up yaml files, since they really just look like plain text.                86        if file.endswith(".yaml"):87            mime = "application/x-yaml"88        # * It appears that MPEG program streams look like targa image files,89        # we we can detect them by looking a little harder... (plus, nobody uses targa)90        if mime == 'image/x-tga':91            result = subprocess.run([self.get_tool_path('file'), '-k', '--dereference', file], stdout=subprocess.PIPE, check=True)92            extended = str(result.stdout, 'utf-8').rstrip()93            if 'MPEG' in extended:94                mime = 'video/mpeg'95        return mime96    def probe_time_based_media(self, file, data):97        """98        Use ffprobe to get information about a file and update the data99        structure with that information.100        """101        if (not re.match(r"(audio|video)/", data['container']['mime_type'])) and not file.endswith(".mkv"):102            return103        result = subprocess.run([self.get_tool_path('ffprobe'), '-v', '0', '-print_format', 'json', '-show_format', '-show_streams', file],104                                check=True, stdout=subprocess.PIPE)105        f = yaml.load(str(result.stdout, 'utf-8'), Loader=yaml.Loader)106        107        data['container']['duration'] = float(f['format']['duration'])108        data['container']['format'] = f['format']['format_name']109        if 'tags' in f['format']:110            data['container']['tags'] = {}111            for t in f['format']['tags']:112                data['container']['tags'][t] = f['format']['tags'][t]113        counter = 0114        data['streams'] = {}115        for stream in f['streams']:116            s = {}117            if stream['codec_type'] == 'audio':118                s['@type'] = 'audio'119                if 'codec_name' in  stream:120                    s['codec'] = stream['codec_name']121                elif 'codec_tag_string' in stream:122                    s['codec'] = stream['codec_tag_string']123                if 'duration' in stream:124                    s['duration'] = float(stream['duration'])125                elif 'tags' in stream and 'DURATION' in stream['tags']:126                    # matroska stores the duration in the tags in hh:mm:ss.sss format127                    s['duration'] = MediaProbe.hhmmss2secs(stream['tags']['DURATION'])128                else:129                    s['duration'] = data['container']['duration']130                s['sample_format'] = stream['sample_fmt']131                s['channels'] = stream['channels']132                if 'channel_layout' in stream:133                    s['channel_layout'] = stream['channel_layout']134                else:135                    # make some educated guesses136                    if s['channels'] == 1:137                        s['channel_layout'] = 'mono'138                    elif s['channels'] == 2:139                        s['channel_layout'] = 'stereo'140                s['sample_rate'] = int(stream['sample_rate'])141                if 'bits_per_sample' in stream:142                    s['bits_per_sample'] = int(stream['bits_per_sample'])143                elif 'bits_per_raw_sample' in stream:144                    s['bits_per_sample'] = int(stream['bits_per_raw_sample'])145                if s['bits_per_sample'] == 0:146                    s.pop('bits_per_sample')147                if 'bit_rate' in stream:148                    s['bit_rate'] = int(stream['bit_rate'])149                if 'tags' in stream:150                    s['user_data'] = {}151                    for t in stream['tags']:152                        s['user_data'][t] = stream['tags'][t]153            elif stream['codec_type'] == 'video':154                s['@type'] = 'video'155                if 'codec_name' in  stream:156                    s['codec'] = stream['codec_name']157                elif 'codec_tag_string' in stream:158                    s['codec'] = stream['codec_tag_string']159                # duration160                if 'duration' in stream:161                    s['duration'] = float(stream['duration'])162                elif 'tags' in stream and 'DURATION' in stream['tags']:163                    # matroska stores the duration in the tags in hh:mm:ss.sss format164                    s['duration'] = MediaProbe.hhmmss2secs(stream['tags']['DURATION'])165                else:166                    s['duration'] = data['container']['duration']167                168                # get video dimensions169                dims = {'width': stream['width'],170                        'height': stream['height']}171                if stream['width'] > 0 and stream['height'] > 0:172                    if 'sample_aspect_ratio' not in stream:173                        # without any information, we'll assume 1:1174                        stream['sample_aspect_ratio'] = '1:1'175                    dims['sample_aspect_ratio'] = MediaProbe.ratio2fraction(stream['sample_aspect_ratio'])176                    177                    if 'display_aspect_ratio' not in stream:178                        # without any information, the ratio is the sample aspect ratio and179                        # the ratio of width and height...using some math.180                        sar = fractions.Fraction(dims['sample_aspect_ratio'][0],181                                                dims['sample_aspect_ratio'][1])182                        par = fractions.Fraction(stream['width'], stream['height'])183                        stream['display_aspect_ratio'] = sar * par184                    dims['display_aspect_ratio'] = MediaProbe.ratio2fraction(stream['display_aspect_ratio'])185                s['dimensions'] = dims186                if 'pix_fmt' in stream:187                    s['pixel_format'] = stream['pix_fmt']188                if 'bit_rate' in stream:189                    s['bit_rate'] = int(stream['bit_rate'])190                if 'bits_per_sample' in stream:191                    s['bits_per_sample'] = int(stream['bits_per_sample'])192                elif 'bits_per_raw_sample' in stream:193                    s['bits_per_sample'] = int(stream['bits_per_raw_sample'])194                s['frame_rate'] = round(float(fractions.Fraction(stream['r_frame_rate'])), 2)195                if 'color_space' in stream:196                    s['color_space'] = stream['color_space']197                if 'color_transfer' in stream:198                    s['color_transfer'] = stream['color_transfer']199                if 'profile' in stream:200                    s['codec_profile'] = stream['profile']201                if 'tags' in stream:202                    s['user_data'] = {}203                    for t in stream['tags']:204                        s['user_data'][t] = stream['tags'][t]205            else:206                # for a data stream, we're just going to dump the tags...we don't207                # it could be a timecode or subtitle stream, or something else.208                s['@type'] = 'data'209                if 'tags' in stream:210                    s['user_data'] = {}211                    for t in stream['tags']:212                        s['user_data'][t] = stream['tags'][t]213            214            215            if s['@type'] not in data['streams']:216                data['streams'][s['@type']] = []217            s['@position'] = counter218            data['streams'][s['@type']].append(s)219            counter += 1 220    @staticmethod221    def hhmmss2secs(duration):222        "Convert a hh:mm:ss.sss string to seconds."223        parts = duration.split(":")224        return int(parts[0]) * 3600 + int(parts[1]) * 60 + float(parts[2])225    @staticmethod226    def ratio2fraction(ratio):227        if type(ratio) is str:228            if ':' in ratio:229                ratio = ratio.replace(':', "/")230        f = fractions.Fraction(ratio)231        return [f.numerator, f.denominator]232    def probe_image_media(self, file, data):233        """234        Use ImageMagick's identify to gather information about a file235        """236        if not re.match(r"image/", data['container']['mime_type']):237            return238        format_string = '''{239    "@type": "image",240    "dimensions": {241        "width": %[width],242        "height": %[height],243        "resolution": {244        "horizontal": %[resolution.x],245        "vertical": %[resolution.y],246        "unit": "%[units]"247        }248    },249    "pixel_type": "%[channels]",250    "codec": "%[magick]",251    "bit_depth": %[bit-depth],252    "compression": "%[compression]",253    "color_profile": "%[profile:icc]"254    },'''255        result = subprocess.run([self.get_tool_path('identify'), '-format', format_string, file], 256                                stdout=subprocess.PIPE, check=True)257        data['streams'] = {'image': []}258        counter = 0259        for image in yaml.load('[' + str(result.stdout, 'utf-8').rstrip().rstrip(',') + "]", Loader=yaml.Loader):260            i = image261            r = i['dimensions']['resolution']262            if r['unit'].startswith("PixelsPer"):263                r['unit'] = r['unit'][9:].lower()264            else:265                r.pop('unit')266            if r['horizontal'] == 0 or r['vertical'] == 0:267                i['dimensions'].pop('resolution')268            if i['color_profile'] == "":269                i.pop('color_profile')270            271            for k in ('codec', 'compression', 'pixel_type'):272                i[k] = i[k].lower()273            i['@position'] = counter274            data['streams']['image'].append(i)275            counter += 1276 277    def probe_text(self, file, data):278        """ 279        Probe a text file for more information.280        """281        282        if (not re.match(r"text/", data['container']['mime_type'])283            and not re.match(r"application/xml", data['container']['mime_type'])):284            return285        s = {'@type': 'text'}286        result = subprocess.run([self.get_tool_path('file'), '--brief', '--mime-encoding', '--dereference', file], stdout=subprocess.PIPE, check=True)287        s['encoding'] = str(result.stdout, 'utf-8').rstrip()288        result = subprocess.run([self.get_tool_path('file'), '--brief', '--dereference', file], stdout=subprocess.PIPE, check=True)289        s['description'] = str(result.stdout, 'utf-8').rstrip()290        291        # If this is XML, then let's do a little more probing...basically get the root292        # node, and perhaps a better encoding.  Don't actually parse the XML, just use293        # some regexes294        if data['container']['mime_type'].endswith("/xml"):295            with open(file, "r") as f:296                content = f.read()297                m = re.search(r"<\?xml[^>]+encoding=[\"\'](.+?)[\"\']", content)298                if m:299                    s['encoding'] = m.group(1)300                m = re.search(r"<([a-zA-Z_].+?)[\s>]", content)301                if m:302                    s['description'] = f"XML Document with '{m.group(1)}' root node"303        304        data['streams'] = {'text': []}305        s['@position'] = 0306        data['streams']['text'].append(s)307    def probe_document(self, file, data):308        """309        Handle office-type documents:  pdf, doc, docx, xls, xlsx, ppt, pptx310        """311        s = {'@type': 'document'}312        mime_type = data['container']['mime_type']313        if mime_type == "application/pdf":314            result = subprocess.run([self.get_tool_path('pdfinfo'), file], stdout=subprocess.PIPE, check=True)315            for l in str(result.stdout, 'utf-8').rstrip().split("\n"):316                #print(l)317                k, v = [x.strip() for x in l.split(":", 1)]318                #print(f"K={k}, V={v}")319                if k == "PDF version":320                    s['version'] = v321                elif k == "Pages":322                    s['pages'] = int(v)323                elif k == "Page size":324                    s['page_size'] = v325                elif k in ('Creator', 'Producer', 'Tagged'):326                    if v != "":327                        if 'user_data' not in s:328                            s['user_data'] = {}...

shell_interface.py

Source:shell_interface.py

...23    :param output_path: the path to send results.24    :type output_path: str25    :return: the response to the process being run26    """27    designite_config = config_interface.get_tool_path("designite")2829    cmd = [30        'java', f'-Xmx{designite_config["max_allocation"]}', '-jar', designite_config["path"],31        '-i', dir_to_analyze,32        '-o', output_path33    ]34    return _run_process(cmd)353637def run_ref_miner(repo_to_analyze, branch, output_file):38    """39    runs refactoring miner on a repo4041    :param repo_to_analyze: the repository to analyze42    :type repo_to_analyze: str43    :param branch: the branch to analyze44    :type branch: str45    :param output_file: the location of the output46    :type output_file: str47    :return: the response to the process being run48    """49    ref_miner_config = config_interface.get_tool_path("refactoring_miner")5051    cmd = [ref_miner_config["path"], '-a', repo_to_analyze, branch, '-json', output_file]52    return _run_process(cmd)535455def run_weka_filter(filter_method, filter_options, input_file, output_file):56    """57    Runs the weka filter on a file5859    :param filter_method: The filtering method60    :type filter_method: str61    :param filter_options: special options for the filter62    :type filter_options: str63    :param input_file: the file to run the filter on64    :type input_file: str65    :param output_file: the file containing the filtered results66    :type output_file: str67    :return: the response to the process being run68    """69    weka_config = config_interface.get_tool_path("weka")7071    cmd = [72        'java', '-classpath', f'"{weka_config["path"]}"', filter_method,73        '-i', f'"{input_file}"',74        '-o', f'"{output_file}"', filter_options75    ]76    return _run_process(cmd)777879def run_weka_classifier(classifier_method, classifier_options, input_path, model_output_path=None):80    """81    Runs the weka classifier on a file8283    :param classifier_method: The classifying method84    :type classifier_method: str85    :param classifier_options: special options for the classifier86    :type classifier_options: str87    :param input_path: the path of the file to be classified88    :type input_path: str89    :param model_output_path: the path for the output of the classification90    :type model_output_path: str91    :return: the response to the process being run92    """93    weka_config = config_interface.get_tool_path("weka")9495    model_arg = ''96    cmd = ['java', '-classpath', f'"{weka_config["path"]}"', classifier_method, '-t', f'"{input_path}"', '-o', '-v',97           classifier_options, model_arg]9899    if model_output_path is not None:100        cmd.extend(['-d', model_output_path])101        # model_arg = f'-d {model_output_path}'102103    return _run_process(cmd, check_out=True)104105106def load_and_run_weka_classifier(classifier_method, model_input_file, input_path):107    """108    Runs premade classifier on input file109110    :param classifier_method: the classifier to run111    :type classifier_method: str112    :param model_input_file: the model path113    :type model_input_file: str114    :param input_path: the file path115    :type input_path: str116    :return: the response to the process being run117    """118    weka_config = config_interface.get_tool_path("weka")119120    cmd = ['java', '-classpath', f'"{weka_config["path"]}"', classifier_method, '-l',121           f'"{model_input_file}"', '-T', f'"{input_path}"', '-p', '0']122    return _run_process(cmd, check_out=True)123124125def run_git_log_tags(repo_path):126    cmd = ['git', '-C', repo_path, 'log', '--no-walk', '--tags', '--reverse', '--date=iso-local', '--format=%H,%ad,%D']127    return _run_process(cmd, check_out=True)128129130def checkout_commit(repo_path, commit_hash):131    cmd = ['git', '-C', repo_path, 'checkout', '-f', commit_hash]132    return _run_process(cmd)
...

tools.py

Source:tools.py

1from os.path import join, dirname, abspath2from linguard.common.utils.system import Command, CommandResult3def get_tools_folder():4    return join(dirname(dirname(abspath(__file__))), "tools")5def get_tool_path(name: str):6    return join(get_tools_folder(), name)7def run_tool(name: str, as_root: bool = False) -> CommandResult:8    return Command(get_tool_path(name)).run(as_root)9def run_tool_as_root(name: str) -> CommandResult:...

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