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How to use cleanup_process method in lisa

Best Python code snippet using lisa_python

athens_scrapping.py

Source:athens_scrapping.py

1import requests, re, pandas as pd2from sqlalchemy import create_engine3from dateparser.search import search_dates4from bs4 import BeautifulSoup5import camelot, pandas as pd6import numpy as np7from pandas import *8from scraping.models import *9def html_parser(url):10    '''Gets a URL to return the html parsed code to be used on a soup variable'''11    try:12        page = requests.get(url)13    except requests.exceptions.Timeout:14        #TODO: try again in 30 minutes (add trigger)15        pass16    except requests.exceptions.HTTPError as err:17        raise SystemExit(err)18    soup = BeautifulSoup(page.content, "html.parser")19    #returns HTML code of the website20    return soup21def get_pdf_list(parsed_url):22    '''Gets list of pdfs of the last 5 days of pdfs from parsed html code'''23    soup = html_parser(parsed_url)24    #Get list of URLs including pdf files25    pdf_docs = soup.find_all('a', {'title': re.compile(r'.*\.pdf')})26    #Get list of titles and urls. NOTE: ENTER THE NUMBER OF DOCS27    try:28        pdf_json = []29        for pdf_doc in pdf_docs[:3]:30            pdf_title = pdf_doc.find(text=True, recursive = False).strip()31            pdf_url = parsed_url+pdf_doc.get('href').strip()32            onhold_date = search_dates(pdf_title, languages=['el'])[0][1]33            #Add to json item34            item = {"pdf_title": pdf_title, "pdf_url": pdf_url, "onhold_date":onhold_date}35            pdf_json.append(item)36    except:37        print(f"Error s101 {pdf_title}")38        raise Exception(f"Couldn't build json file with urls, title: {pdf_title} and onhold date")39    print("Page parsed and json has been built with doc title, url and onhold date")40    return pdf_json41'''TODO: Change to be secure'''42def pass_to_database(username, password, server, port, database, dataframe, table):43    engine = create_engine(f'postgresql://{username}:{password}@{server}:{port}/{database}', encoding='utf-8-sig')44    dataframe.to_sql(table, engine, if_exists='replace')45def runcsript():46    #Define the URL that you want to scrape:47    athens_hospitals_url = 'https://www.moh.gov.gr/articles/citizen/efhmeries-nosokomeiwn/68-efhmeries-nosokomeiwn-attikhs'48    pdf_json_info = get_pdf_list(athens_hospitals_url) #json data of hospitals49    '''Start of cleanup process50    for i, json_item in enumerate(pdf_json_info):51        if "ÎÎ¡ÎÎ ÎÎ ÎÎÎÎÎÎÎÎÎ ÎÎÎÎ£Î" in json_item['pdf_title'] and json_item['onhold_date'] == pdf_json_info[i+1]['onhold_date']:52            pdf_json_info.pop(i+1)53    '''54    tables_received = []55    for pdf_item in pdf_json_info:56        pdf_url = pdf_item["pdf_url"]57        pdf_title = pdf_item["pdf_title"]58        onhold_date = pdf_item["onhold_date"]59        print(f"Getting thought the item with title: {pdf_title}")60        try:61            #Read pdf62            tables = camelot.read_pdf(pdf_url, pages ='1-end')63            number_of_tables = tables.n64            num_of_columns = len(tables[0].df.columns)65            print(f"num of tables: {number_of_tables}, num of columns: {num_of_columns}")66        except:67            print(f"Error s102 {pdf_title}")68            raise Exception(f"Couldn't parse the pdf file with title: {pdf_title}")69        '''Process to concat tables'''70        try:71            all_tables = []72            for i in range(number_of_tables):73                table = tables[i].df74                all_tables.append(table)75            concat_pdf_tables = pd.concat(all_tables, axis=0, ignore_index=True)76            concat_pdf_tables.rename(columns={concat_pdf_tables.columns[0]: "clinic" }, inplace = True) #Set first column to Clinic77            start_new_table_from = concat_pdf_tables.loc[concat_pdf_tables['clinic'].str.contains("ÎÎÎÎÎÎÎÎ£|ÎÎ»Î¹Î½Î¹ÎºÎÏ", case=False)].first_valid_index() #Returns the first id 78            concat_pdf_tables = concat_pdf_tables.iloc[start_new_table_from:].reset_index(drop=True)79            new_header = concat_pdf_tables.iloc[0] #grab the first row for the header80            concat_pdf_tables = concat_pdf_tables[1:] #take the data less the header row81            concat_pdf_tables.columns = new_header #set the header row as the df header82            concat_pdf_tables.reset_index(drop=True)83            concat_pdf_tables.rename(columns={concat_pdf_tables.columns[0]: "clinic" }, inplace = True) #Set first column to Clinic84            search = concat_pdf_tables.loc[concat_pdf_tables['clinic'].str.contains("ÎÎÎÎÎÎÎÎ£|ÎÎ»Î¹Î½Î¹ÎºÎÏ", case=False)] #Find and remove all the clinic rows85            final_results = concat_pdf_tables.drop(search.index.values).reset_index(drop=True)86            df_unpivoted = final_results.melt(id_vars=['clinic', 'Î ÎÎ¡ÎÎ¤ÎÎ¡ÎÎ£ÎÎÎ£'], var_name='onhold_time', value_name='hospital_names')87            df_unpivoted['hospital_names'].replace('', np.nan, inplace=True)88            df_unpivoted.dropna(subset=['hospital_names'], inplace=True)89            df_unpivoted = df_unpivoted.reset_index(drop=True)90            cleanup_process = df_unpivoted.rename(columns={"Clinic":"clinic", "Î ÎÎ¡ÎÎ¤ÎÎ¡ÎÎ£ÎÎÎ£":"note", "onhold_time":"onhold_hour", "hospital_names":"hospital_name"})91            cleanup_process.head()92            #cleanup_process = cleanup_process.replace({r'\s+$': '', r'^\s+': ''}, regex=True).replace(r'Î ÎÎÎ¡ÎÎÎÎ£\n',  'Î ÎÎÎ¡ÎÎÎÎ£ ', regex=True) #remove this if needed93            cleanup_process = cleanup_process.replace({r'\s+$': '', r'^\s+': ''}, regex=True).replace(r'\nÎ ÎÎÎ¡ÎÎÎÎ£ \n',  ', Î ÎÎÎ¡ÎÎÎÎ£ ', regex=True)94            cleanup_process = cleanup_process.replace({r'\s+$': '', r'^\s+': ''}, regex=True).replace(r'\nÎ ÎÎÎ¡ÎÎÎÎ£\n',  ' Î ÎÎÎ¡ÎÎÎÎ£ ', regex=True)95            cleanup_process = cleanup_process.replace({r'\s+$': '', r'^\s+': ''}, regex=True).replace(r'Î ÎÎÎ¡ÎÎÎÎ£ \n',  'Î ÎÎÎ¡ÎÎÎÎ£ ', regex=True)96            cleanup_process = cleanup_process.replace({r'\s+$': '', r'^\s+': ''}, regex=True).replace(r'Î. \nÎÎÎÎÎÎÎÎ¤ÎÎ£',  'Î. ÎÎÎÎÎÎÎÎ¤ÎÎ£', regex=True)97            cleanup_process = cleanup_process.replace({r'\s+$': '', r'^\s+': ''}, regex=True).replace(r'Î \nÎ ÎÎÎÎÎÎÎ¡ÎÎ£Î¤ÎÎ£',  'Î Î ÎÎÎÎÎÎÎ¡ÎÎ£Î¤ÎÎ£', regex=True)98            cleanup_process = cleanup_process.replace({r'\s+$': '', r'^\s+': ''}, regex=True).replace(r'ÎÎ. \nÎ ÎÎÎ¤ÎÎÎÎÎÎ©Î',  'ÎÎ. Î ÎÎÎ¤ÎÎÎÎÎÎ©Î', regex=True)99            cleanup_process = cleanup_process.replace({r'\s+$': '', r'^\s+': ''}, regex=True).replace(r'ÎÎÎÎÎ \nÎÎÎÎ¡ÎÎ¥Î¡ÎÎ',  'ÎÎÎÎÎ ÎÎÎÎ¡ÎÎ¥Î¡ÎÎ', regex=True)100            cleanup_process = cleanup_process.replace({r'\s+$': '', r'^\s+': ''}, regex=True).replace(r'ÎÎÎÎÎ£ \nÎ£ÎÎÎÎÎ£',  'ÎÎÎÎÎ£ Î£ÎÎÎÎÎ£', regex=True)101            cleanup_process = cleanup_process.replace({r'\s+$': '', r'^\s+': ''}, regex=True).replace(r'\nÎ.',  ', Î.', regex=True)102            cleanup_process = cleanup_process.replace({r'\s+$': '', r'^\s+': ''}, regex=True).replace(r'\nÎ .',  ', Î .', regex=True)103            cleanup_process = cleanup_process.replace({r'\s+$': '', r'^\s+': ''}, regex=True).replace(r'\nÎ.',  ', Î.', regex=True)104            cleanup_process = cleanup_process.replace({r'\s+$': '', r'^\s+': ''}, regex=True).replace(r'\nÎ¨.',  ', Î¨.', regex=True)105            cleanup_process = cleanup_process.replace({r'\s+$': '', r'^\s+': ''}, regex=True).replace(r'\n',  ' ', regex=True)106            separate_data = cleanup_process['hospital_name'].str.split(',').apply(Series, 1).stack()107            separate_data.index = separate_data.index.droplevel(-1)108            separate_data.name = 'hospital_name'109            del cleanup_process['hospital_name']110            final_data = cleanup_process.join(separate_data)111            final_data['onhold_date'] = onhold_date112            final_data['region'] = "Athens"113            final_data['hospital_name'] = final_data['hospital_name'].str.strip()114            final_data = final_data[final_data.hospital_name != 'Î ÎÎÎ¡ÎÎÎÎ£']115            final_data = final_data.reset_index(drop=True)116            tables_received.append(final_data)117            print(f"Table for day: {onhold_date} and pdf {pdf_title} was added")118        except:119            print(f"Error s103 {table}")120            raise Exception(f"Couldn't build the table with na: {table}")121    df_merge = pd.concat(tables_received)122    df_merge.reset_index(drop=True)123    # Not able to iterate directly over the DataFrame124    df_records = df_merge.to_dict('region')125    return df_records126if __name__ == '__main__':127    # test1.py executed as script128    # do something...

main.py

Source:main.py

1from subprocess import Popen, PIPE2import atexit3import os4agent_processes = [None, None]5def cleanup_process():6    global agent_processes7    for proc in agent_processes:8        if proc is not None:9            proc.kill()10def js_agent(observation, configuration):11    """12    a wrapper around a js agent13    """14    global agent_processes15    agent_process = agent_processes[observation.player]16    ### Do not edit ###17    if agent_process is None:18        cwd = os.path.dirname(configuration["__raw_path__"])19        agent_process = Popen(["node", "dist/main.js"], stdin=PIPE, stdout=PIPE, cwd=cwd)...

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