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How to use _output_names method in lisa

Best Python code snippet using lisa_python

common.py

Source:common.py

1#!/usr/bin/env python2#=============================================================================3#4#  Copyright (c) 2015-2016 Qualcomm Technologies, Inc.5#  All Rights Reserved.6#  Confidential and Proprietary - Qualcomm Technologies, Inc.7#8#=============================================================================9from abc import ABCMeta, abstractmethod10from util import ConverterError11from converters import code_to_message12class LayerDescriptor(object):13    def __init__(self, layer_type, layer_name, operations, output_names=None):14        """15        Defines a base class to hold information regarding a layer's parameters extracted from a set of operations16        within a tensorflow.Graph.17        :type layer_type: str18        :type layer_name: str19        :type operations: list[tensorflow.Operation]20        """21        super(LayerDescriptor, self).__init__()22        self.layer_type = layer_type23        self.layer_name = str(layer_name)24        self.child_ops = operations25        self._ignored = False26        self._output_names = output_names27    @property28    def output_names(self):29        """30        :rtype: [str]31        """32        if self._output_names is None:33            return [str(self.child_ops[-1].outputs[0].name)]34        else:35            return self._output_names36    @output_names.setter37    def output_names(self, value):38        self._output_names = value39    def get_output_names_for(self, input_tensors):40        """41        :type input_tensors: [tensorflow.Tensor]42        :rtype: [str]43        """44        output_tensors = [t for o in self.child_ops for t in o.outputs]45        return [str(t.name) for t in input_tensors if t in output_tensors]46    @classmethod47    def none(cls):48        """49        Returns a LayerDescriptor to represent an invalid layer. This is used50        by implementations of LayerBuilder.build_layer_descriptor(..) to convey51        not being able to extract a layer from a set of graph operations.52        :rtype: LayerDescriptor.53        """54        return LayerDescriptor("none", "none", [])55    def set_ignored(self, ignored):56        """57        Sets the descriptor as ignored which will cause58        the conversion process to not build a layer from59        this descriptor.60        :type ignored: bool61        :return:62        """63        self._ignored = ignored64    @property65    def is_ignored(self):66        return self._ignored67    def is_output_op(self, op):68        if self._output_names is not None:69            return op.outputs[0].name in self._output_names70        else:71            return self.child_ops[-1] == op72    def is_input_op(self, op):73        return op in self.child_ops74    def __eq__(self, other):75        result = False76        if isinstance(other, self.__class__):77            result = (self.layer_name == other.layer_name)78            result = result and (self.child_ops == other.child_ops)79        return result80    def __hash__(self):81        return hash(tuple(self.layer_name, ) + tuple(self.child_ops))82class InputLayerDescriptor(LayerDescriptor):83    def __init__(self, name, nodes):84        super(InputLayerDescriptor, self).__init__('Input', name, nodes)85class LayerResolver(object):86    """87    Defines an API for each type of layer to extend and implement it's layer parameter resolution.88    """89    __metaclass__ = ABCMeta90    @abstractmethod91    def resolve_layer(self, graph_matcher, graph_helper):92        """93        :type graph_matcher: GraphMatcher94        :type graph_helper: GraphHelper95        :rtype: list(LayerDescriptor)96        """97        pass98    def is_final_resolution(self):99        return False100class LayerBuilder(object):101    """102    Defines an API for each type of layer to extend and implement how to build the layer in the target format.103    """104    __metaclass__ = ABCMeta105    @abstractmethod106    def build_layer(self, converter_context, descriptor, input_descriptors, output_descriptors):107        """108        Creates  a layer from the specified LayerDescriptor and returns an int representing the layer unique id.109        :type converter_context: converters.tensorflow.converter.ConverterContext110        :type descriptor: converters.tensorflow.common.LayerDescriptor111        :type input_descriptors: [converters.tensorflow.common.LayerDescriptor]112        :type output_descriptors: [converters.tensorflow.common.LayerDescriptor]113        :rtype: int114        """115        pass116    def transform_layer(self, converter_context, descriptor, input_descriptors, output_descriptors):117        """118        Allows builders to fuse or skip layers.119        :type converter_context: converters.tensorflow.converter.ConverterContext120        :type descriptor: converters.tensorflow.common.LayerDescriptor121        :type input_descriptors: [converters.tensorflow.common.LayerDescriptor]122        :type output_descriptors: [converters.tensorflow.common.LayerDescriptor]123        """124        pass125    @classmethod126    def get_input_name(cls, converter_context, descriptor, input_descriptors):127        """128        :type converter_context: converters.tensorflow.converter.ConverterContext129        :type input_descriptors: [LayerDescriptor]130        :type descriptor: LayerDescriptor131        :rtype: str132        """133        if len(input_descriptors) > 1:134            raise ConverterError(code_to_message.get_message('ERROR_TF_LAYER_INPUT_COUNT_ERROR')(135                input_descriptors[0].layer_type, 1, len(input_descriptors)136            ))137        input_names = cls.get_input_names(converter_context, descriptor, input_descriptors)138        if len(input_names) == 0:139            raise ConverterError(code_to_message.get_message('ERROR_TF_LAYER_NO_INPUT_FOUND')(140                descriptor.layer_type, descriptor.layer_name))141        if len(input_names) > 1:142            raise ConverterError(code_to_message.get_message('ERROR_TF_LAYER_INPUT_COUNT_ERROR')(143                input_descriptors[0].layer_type, 1, len(input_descriptors)144            ))145        return input_names[0]146    @classmethod147    def get_input_names(cls, converter_context, descriptor, input_descriptors):148        """149        :type converter_context: converters.tensorflow.converter.ConverterContext150        :type input_descriptors: [LayerDescriptor]151        :type descriptor: LayerDescriptor152        :rtype: str153        """154        input_names = []155        for d in input_descriptors:156            input_tensors = converter_context.get_output_tensors_between(d, descriptor)157            input_names.extend(d.get_output_names_for(input_tensors))158        if len(input_names) == 0:159            raise ConverterError(code_to_message.get_message('ERROR_TF_LAYER_NO_INPUT_FOUND')(160                descriptor.layer_type, descriptor.layer_name))...

wrappers.py

Source:wrappers.py

1# -*- coding: utf-8 -*-2# emacs: -*- mode: python; py-indent-offset: 4; indent-tabs-mode: nil -*-3# vi: set ft=python sts=4 ts=4 sw=4 et:4"""5# changing to temporary directories6    >>> tmp = getfixture('tmpdir')7    >>> old = tmp.chdir()8"""9from ... import logging10from ..base import (11    traits,12    DynamicTraitedSpec,13    Undefined,14    isdefined,15    BaseInterfaceInputSpec,16)17from ..io import IOBase, add_traits18from ...utils.filemanip import ensure_list19from ...utils.functions import getsource, create_function_from_source20iflogger = logging.getLogger("nipype.interface")21class FunctionInputSpec(DynamicTraitedSpec, BaseInterfaceInputSpec):22    function_str = traits.Str(mandatory=True, desc="code for function")23class Function(IOBase):24    """Runs arbitrary function as an interface25    Examples26    --------27    >>> func = 'def func(arg1, arg2=5): return arg1 + arg2'28    >>> fi = Function(input_names=['arg1', 'arg2'], output_names=['out'])29    >>> fi.inputs.function_str = func30    >>> res = fi.run(arg1=1)31    >>> res.outputs.out32    633    """34    input_spec = FunctionInputSpec35    output_spec = DynamicTraitedSpec36    def __init__(37        self,38        input_names=None,39        output_names="out",40        function=None,41        imports=None,42        **inputs43    ):44        """45        Parameters46        ----------47        input_names: single str or list or None48            names corresponding to function inputs49            if ``None``, derive input names from function argument names50        output_names: single str or list51            names corresponding to function outputs (default: 'out').52            if list of length > 1, has to match the number of outputs53        function : callable54            callable python object. must be able to execute in an55            isolated namespace (possibly in concert with the ``imports``56            parameter)57        imports : list of strings58            list of import statements that allow the function to execute59            in an otherwise empty namespace60        """61        super(Function, self).__init__(**inputs)62        if function:63            if hasattr(function, "__call__"):64                try:65                    self.inputs.function_str = getsource(function)66                except IOError:67                    raise Exception(68                        "Interface Function does not accept "69                        "function objects defined interactively "70                        "in a python session"71                    )72                else:73                    if input_names is None:74                        fninfo = function.__code__75            elif isinstance(function, (str, bytes)):76                self.inputs.function_str = function77                if input_names is None:78                    fninfo = create_function_from_source(function, imports).__code__79            else:80                raise Exception("Unknown type of function")81            if input_names is None:82                input_names = fninfo.co_varnames[: fninfo.co_argcount]83        self.inputs.on_trait_change(self._set_function_string, "function_str")84        self._input_names = ensure_list(input_names)85        self._output_names = ensure_list(output_names)86        add_traits(self.inputs, [name for name in self._input_names])87        self.imports = imports88        self._out = {}89        for name in self._output_names:90            self._out[name] = None91    def _set_function_string(self, obj, name, old, new):92        if name == "function_str":93            if hasattr(new, "__call__"):94                function_source = getsource(new)95                fninfo = new.__code__96            elif isinstance(new, (str, bytes)):97                function_source = new98                fninfo = create_function_from_source(new, self.imports).__code__99            self.inputs.trait_set(100                trait_change_notify=False, **{"%s" % name: function_source}101            )102            # Update input traits103            input_names = fninfo.co_varnames[: fninfo.co_argcount]104            new_names = set(input_names) - set(self._input_names)105            add_traits(self.inputs, list(new_names))106            self._input_names.extend(new_names)107    def _add_output_traits(self, base):108        undefined_traits = {}109        for key in self._output_names:110            base.add_trait(key, traits.Any)111            undefined_traits[key] = Undefined112        base.trait_set(trait_change_notify=False, **undefined_traits)113        return base114    def _run_interface(self, runtime):115        # Create function handle116        function_handle = create_function_from_source(117            self.inputs.function_str, self.imports118        )119        # Get function args120        args = {}121        for name in self._input_names:122            value = getattr(self.inputs, name)123            if isdefined(value):124                args[name] = value125        out = function_handle(**args)126        if len(self._output_names) == 1:127            self._out[self._output_names[0]] = out128        else:129            if isinstance(out, tuple) and (len(out) != len(self._output_names)):130                raise RuntimeError("Mismatch in number of expected outputs")131            else:132                for idx, name in enumerate(self._output_names):133                    self._out[name] = out[idx]134        return runtime135    def _list_outputs(self):136        outputs = self._outputs().get()137        for key in self._output_names:138            outputs[key] = self._out[key]...

the_pipe.py

Source:the_pipe.py

...11        self.Y_names = Y_names12        self.output_spec = output_spec13        self.the_pipe = []14        self.verbose = verbose15    def _output_names(self, j):16        return list(self.output_spec[j].keys())17    def _determine_names(self, j, blade_runner):18        if isinstance(self.X_names[j], int):19            if self.X_names[j] == 0:20                self.X_names[j] = [x for x in blade_runner.train.columns.values if x not in self._output_names(j)]21            else:22                self.X_names[j] = list(self.output_spec[(j + self.X_names[j])].keys())23        if self.Y_names[j] is None:24            raise Exception("Y_names anyway should be specified as non-None value, set something pls")25    def _fit_predict(self, j, blade_runner):26        self.the_pipe[j].fit(blade_runner.train[self.X_names[j]].values,27                             blade_runner.train[self.Y_names[j]].values)28        if self.output_spec[j] is None:29            cols = numpy.array(self.X_names[j])[self.the_pipe[j].support].tolist()30            self.output_spec[j] = {x: blade_runner.train[x].dtype.name for x in cols}31        blade_runner.train[self._output_names(j)] = self.the_pipe[j].predict(blade_runner.train[self.X_names[j]].values)32        return blade_runner33    def _predict(self, j, blade_runner, on='train'):34        if on == 'train':35            blade_runner.train[self._output_names(j)] = self.the_pipe[j].predict(blade_runner.train[self.X_names[j]].values)36        else:37            blade_runner.test[self._output_names(j)] = self.the_pipe[j].predict(blade_runner.test[self.X_names[j]].values)38        return blade_runner39    def _inverse(self, j, blade_runner, on='train'):40        if on == 'train':41            blade_runner.train[self._output_names(j)] = self.the_pipe[j].inverse(blade_runner.train[self.X_names[j]].values)42        else:43            blade_runner.test[self._output_names(j)] = self.the_pipe[j].inverse(blade_runner.test[self.X_names[j]].values)44        return blade_runner45    def fit(self):46        blade_runner = self.data.copy()47        for j in range(len(self.items)):48            # determine names49            self._determine_names(j, blade_runner)50            # append item51            self.the_pipe.append(self.items[j](**self.items_args[j]))52            # fit and predict53            blade_runner = self._fit_predict(j, blade_runner)54            # print current state55            if self.verbose:56                print(self.the_pipe[j])57    def infer(self, on='train'):...

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