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How to use _deploy method in lisa

Best Python code snippet using lisa_python

attractsave.py

Source:attractsave.py

...32    os.system("chmod +x %s" % sh)33    print("Shell script generated: %s" % sh)34  else:35    print("Cannot generate shell script: form does not contain a valid object")36def _deploy(resource, fname):37  if resource is not None:38    resource.link(fname)39    resource.save()40def deploy(model, dir):41  d = dir + "/"42  if dir in (None, "", ".", "./"): d = ""43  elif dir.endswith("/"): d = dir44  for n,p in enumerate(model.partners):45    _deploy(p.pdbfile,d+"partner-%d.pdb" % (n+1))46    _deploy(p.rmsd_pdb,d+"partner-rmsd-%d.pdb" % (n+1))47    _deploy(p.rmsd_pdb_alt,d+"partner-rmsd-alt-%d.pdb" % (n+1))48    _deploy(p.rmsd_pdb_alt2,d+"partner-rmsd-alt2-%d.pdb" % (n+1))49  _deploy(model.start_structures_file,d+"startstruc.dat")50  _deploy(model.rotations_file,d+"rotations.dat")51  _deploy(model.translations_file,d+"translations.dat")52  _deploy(model.harmonic_restraints_file,d+"harmonic-restraints.tbl")53  _deploy(model.haddock_restraints_file,d+"haddock-restraints.tbl")54  _deploy(model.position_restraints_file,d+"position-restraints.tbl")55def deploy_easy(model, dir):56  d = dir + "/"57  if dir in (None, "", ".", "./"): d = ""58  elif dir.endswith("/"): d = dir59  _deploy(model.partners[0].pdbfile,d+"receptor.pdb")60  _deploy(model.partners[0].rmsd_pdb,d+"receptor-rmsd.pdb")61  _deploy(model.partners[1].pdbfile,d+"ligand.pdb")62  _deploy(model.partners[1].rmsd_pdb,d+"ligand-rmsd.pdb")63  _deploy(model.harmonic_restraints_file,d+"harmonic-restraints.tbl")64  _deploy(model.position_restraints_file,d+"position-restraints.tbl")65def deploy_cryo(model, dir):66  d = dir + "/"67  if dir in (None, "", ".", "./"): d = ""68  elif dir.endswith("/"): d = dir69  for n,p in enumerate(model.partners):70    _deploy(p.pdbfile,d+"partner-%d.pdb" % (n+1))71  _deploy(model.mapfile,d+"map.sit")72  _deploy(model.harmonic_restraints_file,d+"harmonic-restraints.tbl")73def deploy_cryo_easy(model, dir):74  d = dir + "/"75  if dir in (None, "", ".", "./"): d = ""76  elif dir.endswith("/"): d = dir77  for n,p in enumerate(model.partners):78    _deploy(p.pdbfile,d+"partner-%d.pdb" % (n+1))79  _deploy(model.mapfile,d+"map.sit")80def deploy_peptide(model,dir):81  d = dir + "/"82  if dir in (None, "",".","./"): d = ""83  elif dir.endswith("/"): d = dir84  _deploy(model.p1.pdbfile,d+"receptor.pdb")85  _deploy(model.p1.rmsd_pdb,d+"receptor-rmsd.pdb")...

test_g5k_api.py

Source:test_g5k_api.py

...5from enoslib.tests.unit import EnosTest6class TestDeploy(EnosTest):7    def test_deploy_no_undeployed(self):8        with patch("enoslib.infra.enos_g5k.g5k_api_utils.deploy") as m:9            deployed, undeployed = _deploy("rennes", [], [], 0, {})10            m.assert_not_called()11    def test_deploy_max_count(self):12        deploy = mock.Mock()13        with patch("enoslib.infra.enos_g5k.g5k_api_utils.deploy") as m:14            deployed, undeployed = _deploy("rennes", [], [], 4, {})15            m.assert_not_called()16    def test_deploy_2_deploy(self):17        with patch(18            "enoslib.infra.enos_g5k.g5k_api_utils.deploy",19            side_effect=[([1], [2]), ([2], [])],20        ) as m:21            deployed, undeployed = _deploy("rennes", [], [1, 2], 0, {})22            self.assertCountEqual([1, 2], deployed)23            self.assertCountEqual([], undeployed)24    def test_deploy_3_deploy(self):25        with patch(26            "enoslib.infra.enos_g5k.g5k_api_utils.deploy",27            side_effect=[([1], [2]), ([], [2]), ([], [2])],28        ) as m:29            deployed, undeployed = _deploy("rennes", [], [1, 2], 0, {})30            self.assertCountEqual([1], deployed)...

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