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How to use fix3 method in Lemoncheesecake
Best Python code snippet using lemoncheesecake
set_bcs.py
Source:set_bcs.py 
1from dolfin import *2import numpy as np3## set boundary conditions4def set_bcs(sim_geometry,protocol,geo_options,mesh,W,facetboundaries,expr):5 output = {}6 if (sim_geometry == "ventricle") or (sim_geometry == "ellipsoid"):7 # if ventricle or ellipsoid simulation, constrain base in longitudinal direction,8 # and other constraints are in weak form9 topid = 410 LVendoid = 211 epiid = 112 bctop = DirichletBC(W.sub(0).sub(2), Expression(("0.0"), degree = 2), facetboundaries, topid)13 bcs = [bctop]14 elif (sim_geometry == "cylinder") or sim_geometry == "gmesh_cylinder":15 sim_type = protocol["simulation_type"][0]16 if sim_geometry == "cylinder" or sim_geometry == "gmesh_cylinder":17 center = 0.018 radius = 1.019 length = 10.020 else:21 center = 0.522 radius = 0.523 # hard coding in length for simple case24 length = 1.025 # defining parts of the model where the boundary condition should be applied later26 class Left(SubDomain):27 def inside(self, x, on_boundary):28 tol = 1E-1429 return on_boundary and abs(x[0]) < tol30 # where x[0] = 1031 class Right(SubDomain):32 def inside(self, x, on_boundary):33 tol = 1E-1434 return on_boundary and abs(x[0]-length) < tol35 class Fix_y(SubDomain):36 def inside(self, x, on_boundary):37 tol = 1E-1438 return near(x[0],0.0,tol) and near(x[1],center,tol)39 class Fix_y_right(SubDomain):40 def inside(self, x, on_boundary):41 tol = 1E-1442 return near(x[0],10.0,tol) and near(x[1],center,tol)43 class Fix_z_right(SubDomain):44 def inside(self, x, on_boundary):45 tol = 1E-1446 return near(x[0],10.0,tol) and near(x[2],center,tol)47 class Fix_z(SubDomain):48 def inside(self, x, on_boundary):49 tol = 1E-1450 return (near(x[0],0.0,tol) and near(x[2],center,tol))51 # Appropriately mark all facetboundaries52 facetboundaries.set_all(0)53 left = Left()54 right = Right()55 fix_y = Fix_y()56 fix_y_right = Fix_y_right()57 fix_z = Fix_z()58 fix_z_right = Fix_z_right()59 left.mark(facetboundaries, 1)60 right.mark(facetboundaries, 2)61 fix_y.mark(facetboundaries, 3)62 fix_z.mark(facetboundaries,5)63 # fix left face in x, right face is displacement (until traction bc may be triggered)64 bcleft= DirichletBC(W.sub(0).sub(0), Constant((0.0)), facetboundaries, 1)65 bcright= DirichletBC(W.sub(0).sub(0), expr["u_D"], facetboundaries, 2)66 bcfix_y = DirichletBC(W.sub(0).sub(1), Constant((0.0)), fix_y, method="pointwise")67 bcfix_z = DirichletBC(W.sub(0).sub(2), Constant((0.0)), fix_z, method="pointwise")68 bcfix_y_right = DirichletBC(W.sub(0).sub(1), Constant((0.0)),fix_y_right, method="pointwise")69 bcfix_z_right = DirichletBC(W.sub(0).sub(2), Constant((0.0)),fix_z_right, method="pointwise")70 #bcright_after_switch = DirichletBC(W.sub(0).sub(0), disp_holder, facetboundaries, 2)71 bcs = [bcleft,bcfix_y,bcfix_z,bcfix_y_right,bcfix_z_right,bcright] # order matters!72 #if sim_type == "work_loop":73 marker_space = FunctionSpace(mesh,'CG',1)74 bc_right_test = DirichletBC(marker_space,Constant(1),facetboundaries,2)75 test_marker_fcn = Function(marker_space) # this is what we need to grab the displacement after potential shortening76 bc_right_test.apply(test_marker_fcn.vector())77 output["test_marker_fcn"] = test_marker_fcn78 print "KURTIS LOOK HERE, ASSIGNING PROTOCOL ARRAY"79 protocol["end_disp_array"] = np.zeros(int(protocol["simulation_duration"][0]/protocol["simulation_timestep"][0]))80 # storing this bc in the protocol dictionary bc it's already passed into update bcs81 #protocol["bcright_after"] = bcright_after_switch82 elif sim_geometry == "box_mesh":83 sim_type = protocol["simulation_type"][0]84 x_end = geo_options["end_x"][0]85 y_end = geo_options["end_y"][0]86 z_end = geo_options["end_z"][0]87 y_center = y_end/2.88 z_center = z_end/2.89 class Left(SubDomain):90 def inside(self, x, on_boundary):91 tol = 1E-1492 return on_boundary and abs(x[0]) < tol93 # where x[0] = 1094 class Right(SubDomain):95 def inside(self, x, on_boundary):96 tol = 1E-1497 return on_boundary and abs(x[0]-x_end) < tol98 class Fix_y(SubDomain):99 def inside(self, x, on_boundary):100 tol = 1E-14101 return near(x[0],0.0,tol) and near(x[1],y_center,tol)102 class Fix_y_right(SubDomain):103 def inside(self, x, on_boundary):104 tol = 1E-14105 return near(x[0],x_end,tol) and near(x[1],y_center,tol)106 class Fix_z_right(SubDomain):107 def inside(self, x, on_boundary):108 tol = 1E-14109 return near(x[0],x_end,tol) and near(x[2],z_center,tol)110 class Fix_z(SubDomain):111 def inside(self, x, on_boundary):112 tol = 1E-14113 return (near(x[0],0.0,tol) and near(x[2],z_center,tol))114 class Fix(SubDomain):115 def inside(self, x, on_boundary):116 tol = 1E-14117 #return on_boundary and abs(x[0]) < tol and abs(x[1]) < tol and abs(x[2]) < tol118 return (near(x[0],0.0,tol) and near(x[1],0.0,tol) and near(x[2],0.0,tol))119 class Fix2(SubDomain):120 def inside(self, x, on_boundary):121 tol = 1E-14122 return (near(x[0],0.0,tol) and near(x[1],0.0,tol) and near(x[2],z_end,tol))123 class Fix3(SubDomain):124 def inside(self, x, on_boundary):125 tol = 1E-14126 return (near(x[0],0.0,tol) and near(x[1],y_end,tol) and near(x[2],0.0,tol))127 class Fix_y_points_at_right_face(SubDomain):128 def inside(self, x, on_boundary):129 tol = 1E-3130 return (near(x[0],x_end,tol) and near(x[1],y_center,tol))131 class Fix_z_points_at_right_face(SubDomain):132 def inside(self, x, on_boundary):133 tol = 1E-3134 return (near(x[0],x_end,tol) and near(x[2],z_center,tol))135 class Fix_y_points_at_left_face(SubDomain):136 def inside(self, x, on_boundary):137 tol = 1E-3138 return (near(x[0],0.0,tol) and near(x[1],y_center,tol))139 class Fix_z_points_at_left_face(SubDomain):140 def inside(self, x, on_boundary):141 tol = 1E-3142 return (near(x[0],0.0,tol) and near(x[2],z_center,tol))143 class Left_back_midpoint(SubDomain):144 def inside(self, x, on_boundary):145 tol = 1E-14146 return (near(x[0],0.0,tol) and near(x[1],y_center,tol) and near(x[2],0.0,tol))147 class Left_top_midpoint(SubDomain):148 def inside(self, x, on_boundary):149 tol = 1E-14150 return (near(x[0],0.0,tol) and near(x[1],y_end,tol) and near(x[2],z_center,tol))151 class Left_front_midpoint(SubDomain):152 def inside(self, x, on_boundary):153 tol = 1E-14154 return (near(x[0],0.0,tol) and near(x[1],y_center,tol) and near(x[2],z_end,tol))155 class Left_bottom_midpoint(SubDomain):156 def inside(self, x, on_boundary):157 tol = 1E-14158 return (near(x[0],0.0,tol) and near(x[1],0.0,tol) and near(x[2],z_center,tol))159 # Appropriately mark all facetboundaries160 facetboundaries.set_all(0)161 left = Left()162 right = Right()163 fix_y = Fix_y()164 fix_y_right = Fix_y_right()165 fix_z = Fix_z()166 fix_z_right = Fix_z_right()167 fix = Fix()168 fix2 = Fix2()169 fix3 = Fix3()170 fix_y_points_at_right_face = Fix_y_points_at_right_face()171 fix_z_points_at_right_face = Fix_z_points_at_right_face()172 fix_y_points_at_left_face = Fix_y_points_at_left_face()173 fix_z_points_at_left_face = Fix_z_points_at_left_face()174 left_back_midpoint = Left_back_midpoint()175 left_top_midpoint = Left_top_midpoint()176 left_front_midpoint = Left_front_midpoint()177 left_bottom_midpoint = Left_bottom_midpoint()178 left.mark(facetboundaries, 1)179 right.mark(facetboundaries, 2)180 fix_y.mark(facetboundaries, 3)181 fix_z.mark(facetboundaries,5)182 # fix left face in x, right face is displacement (until traction bc may be triggered)183 if sim_type == "ramp_and_hold" or sim_type == "custom":184 bcleft= DirichletBC(W.sub(0).sub(0), Constant((0.0)), facetboundaries, 1)185 bcright= DirichletBC(W.sub(0).sub(0), expr["u_D"], facetboundaries, 2)186 bcfix_y = DirichletBC(W.sub(0).sub(1), Constant((0.0)), fix_y, method="pointwise")187 bcfix_z = DirichletBC(W.sub(0).sub(2), Constant((0.0)), fix_z, method="pointwise")188 bcfix_y_right = DirichletBC(W.sub(0).sub(1), Constant((0.0)),fix_y_right, method="pointwise")189 bcfix_z_right = DirichletBC(W.sub(0).sub(2), Constant((0.0)),fix_z_right, method="pointwise")190 bcfix = DirichletBC(W.sub(0), Constant((0.0, 0.0, 0.0)), fix, method="pointwise")191 bcfix2 = DirichletBC(W.sub(0).sub(0), Constant((0.0)),fix2,method="pointwise")192 bcfix22 = DirichletBC(W.sub(0).sub(1), Constant((0.0)),fix2,method="pointwise")193 bcfix3 = DirichletBC(W.sub(0).sub(0), Constant((0.0)),fix3,method="pointwise")194 bcfix33 = DirichletBC(W.sub(0).sub(2), Constant((0.0)),fix3,method="pointwise")195 #bcs = [bcleft,bcfix_y,bcfix_z,bcfix_y_right,bcfix_z_right,bcright] # order matters!196 bcs = [bcleft,bcfix,bcfix2,bcfix22,bcfix3,bcfix33,bcright]197 if sim_type == "traction_hold":198 print "traction simulation"199 # Similar to cylinder but without fixing displacement along y and z axes to prevent rotation200 bcleft= DirichletBC(W.sub(0).sub(0), Constant((0.0)), facetboundaries, 1) # u1 = 0 on left face201 bcright= DirichletBC(W.sub(0).sub(0), expr["u_D"], facetboundaries, 2)202 bcfix = DirichletBC(W.sub(0), Constant((0.0, 0.0, 0.0)), fix, method="pointwise") # at one vertex u = v = w = 0203 bcfix2 = DirichletBC(W.sub(0).sub(0), Constant((0.0)),fix2,method="pointwise")204 bcfix22 = DirichletBC(W.sub(0).sub(1), Constant((0.0)),fix2,method="pointwise")205 bcfix3 = DirichletBC(W.sub(0).sub(0), Constant((0.0)),fix3,method="pointwise")206 bcfix33 = DirichletBC(W.sub(0).sub(2), Constant((0.0)),fix3,method="pointwise")207 bcs = [bcleft,bcfix,bcfix22,bcfix33] #order matters!208 if sim_type == "stress_strain_loop":209 bcleft= DirichletBC(W.sub(0).sub(0), Constant((0.0)), facetboundaries, 1) # u1 = 0 on left face210 bcright= DirichletBC(W.sub(0).sub(0), expr["u_D"], facetboundaries, 2)211 bcfix = DirichletBC(W.sub(0), Constant((0.0, 0.0, 0.0)), fix, method="pointwise") # at one vertex u = v = w = 0212 bcfix2 = DirichletBC(W.sub(0).sub(0), Constant((0.0)),fix2,method="pointwise")213 bcfix22 = DirichletBC(W.sub(0).sub(1), Constant((0.0)),fix2,method="pointwise")214 bcfix3 = DirichletBC(W.sub(0).sub(0), Constant((0.0)),fix3,method="pointwise")215 bcfix33 = DirichletBC(W.sub(0).sub(2), Constant((0.0)),fix3,method="pointwise")216 bc_fix_y_rf = DirichletBC(W.sub(0).sub(1), Constant((0.0)),fix_y_points_at_right_face,method="pointwise")217 bc_fix_z_rf = DirichletBC(W.sub(0).sub(2), Constant((0.0)), fix_z_points_at_right_face,method="pointwise")218 bc_fix_y_lf = DirichletBC(W.sub(0).sub(1), Constant((0.0)),fix_y_points_at_left_face,method="pointwise")219 bc_fix_z_lf = DirichletBC(W.sub(0).sub(2), Constant((0.0)), fix_z_points_at_left_face,method="pointwise")220 bcleft_back_mp = DirichletBC(W.sub(0), Constant((0.0,0.0,0.0)), left_back_midpoint,method="pointwise")221 bcleft_top_mp = DirichletBC(W.sub(0), Constant((0.0,0.0,0.0)), left_top_midpoint,method="pointwise")222 bcleft_front_mp = DirichletBC(W.sub(0), Constant((0.0,0.0,0.0)), left_front_midpoint,method="pointwise")223 bcleft_bottom_mp = DirichletBC(W.sub(0), Constant((0.0,0.0,0.0)), left_bottom_midpoint,method="pointwise")224 #bcs = [bcleft,bcleft_back_mp,bcleft_top_mp,bcleft_front_mp,bcleft_bottom_mp,bc_fix_yz_rf1,bc_fix_yz_rf2,bcfix_yz_lf1,bcfix_yz_lf2]225 #bcs = [bcleft, bc_fix_y_rf, bc_fix_z_rf, bc_fix_y_lf, bc_fix_z_lf]226 bcs = [bcleft,bcfix,bcfix22,bcfix33,bc_fix_y_rf,bc_fix_z_rf]227 #print "KURTIS LOOK HERE, ASSIGNING PROTOCOL ARRAY"228 protocol["previous_end_disp"] = 0.0229 protocol["diastole"] = 1230 protocol["isovolumic"] = 0231 protocol["ejection"] = 0232 #if sim_type == "work_loop":233 marker_space = FunctionSpace(mesh,'CG',1)234 bc_right_test = DirichletBC(marker_space,Constant(1),facetboundaries,2)235 test_marker_fcn = Function(marker_space) # this is what we need to grab the displacement after potential shortening236 bc_right_test.apply(test_marker_fcn.vector())237 output["test_marker_fcn"] = test_marker_fcn238 elif sim_geometry == "unit_cube":239 sim_type = protocol["simulation_type"][0]240 print "sim type = " + sim_type241 output["test_marker_fcn"] = 0242 class Left(SubDomain):243 def inside(self, x, on_boundary):244 tol = 1E-14245 return on_boundary and abs(x[0]) < tol246 # where x[0] = 10247 class Right(SubDomain):248 def inside(self, x, on_boundary):249 tol = 1E-14250 return on_boundary and abs(x[0]-1.0) < tol251 # where x[2] = 0252 class Lower(SubDomain):253 def inside(self, x, on_boundary):254 tol = 1E-14255 return on_boundary and abs(x[2]) < tol256 class Top(SubDomain):257 def inside(self, x, on_boundary):258 tol = 1E-14259 return on_boundary and abs(x[2]-1.0) < tol260 # where x[1] = 0261 class Front(SubDomain):262 def inside(self, x, on_boundary):263 tol = 1E-14264 return on_boundary and abs(x[1]) < tol265 class Back(SubDomain):266 def inside(self, x, on_boundary):267 tol = 1E-14268 return on_boundary and abs(x[1]-1.) < tol269 # where x[0], x[1] and x[2] = 0270 class Fix(SubDomain):271 def inside(self, x, on_boundary):272 tol = 1E-14273 #return on_boundary and abs(x[0]) < tol and abs(x[1]) < tol and abs(x[2]) < tol274 return (near(x[0],0.0,tol) and near(x[1],0.0,tol) and near(x[2],0.0,tol))275 class Fix2(SubDomain):276 def inside(self, x, on_boundary):277 tol = 1E-14278 return (near(x[0],0.0,tol) and near(x[1],0.0,tol) and near(x[2],1.0,tol))279 class Fix3(SubDomain):280 def inside(self, x, on_boundary):281 tol = 1E-14282 return (near(x[0],0.0,tol) and near(x[1],1.0,tol) and near(x[2],0.0,tol))283 facetboundaries.set_all(0)284 left = Left()285 right = Right()286 fix = Fix()287 fix2 = Fix2()288 fix3 = Fix3()289 lower = Lower()290 front = Front()291 top = Top()292 back = Back()293 #294 left.mark(facetboundaries, 1)295 right.mark(facetboundaries, 2)296 fix.mark(facetboundaries, 3)297 lower.mark(facetboundaries, 4)298 front.mark(facetboundaries, 5)299 top.mark(facetboundaries, 6)300 back.mark(facetboundaries, 7)301 if sim_type == "ramp_and_hold" or sim_type == "custom":302 print "checking expression",expr["u_D"].u_D303 # Similar to cylinder but without fixing displacement along y and z axes to prevent rotation304 bcleft= DirichletBC(W.sub(0).sub(0), Constant((0.0)), facetboundaries, 1) # u1 = 0 on left face305 bcright= DirichletBC(W.sub(0).sub(0), expr["u_D"], facetboundaries, 2)306 bcfix = DirichletBC(W.sub(0), Constant((0.0, 0.0, 0.0)), fix, method="pointwise") # at one vertex u = v = w = 0307 bclower= DirichletBC(W.sub(0).sub(2), Constant((0.0)), facetboundaries, 4) # u3 = 0 on lower face308 bcfront= DirichletBC(W.sub(0).sub(1), Constant((0.0)), facetboundaries, 5) # u2 = 0 on front face309 bcfix2 = DirichletBC(W.sub(0), Constant((0.0,0.0,0.0)),fix2,method="pointwise")310 #bcfix22 = DirichletBC(W.sub(0).sub(1), Constant((0.0)),fix2,method="pointwise")311 bcfix3 = DirichletBC(W.sub(0), Constant((0.0,0.0,0.0)),fix3,method="pointwise")312 #bcfix33 = DirichletBC(W.sub(0).sub(2), Constant((0.0)),fix3,method="pointwise")313 bcs = [bcleft,bcfix3,bclower,bcright] #order matters!314 # Trying shear315 """bcleft= DirichletBC(W.sub(0), Constant((0.0,0.0,0.0)), facetboundaries, 1) # u1 = 0 on left face316 bcleft2 = DirichletBC(W.sub(0).sub(1), Constant((0.0)), facetboundaries, 1)317 bcright= DirichletBC(W.sub(0).sub(1), u_D, facetboundaries, 2)318 bcright2 = DirichletBC(W.sub(0).sub(0), Constant((0.0)), facetboundaries, 2)319 bcright3 = DirichletBC(W.sub(0).sub(2), Constant((0.0)), facetboundaries, 2)320 bcfix = DirichletBC(W.sub(0), Constant((0.0, 0.0, 0.0)), fix, method="pointwise") # at one vertex u = v = w = 0321 bclower= DirichletBC(W.sub(0).sub(2), Constant((0.0)), facetboundaries, 4) # u3 = 0 on lower face322 #bcs = [bcleft, bclower, bcfront,bcfix, bcright] #order matters!323 bcs = [bcleft, bcright,bcright2,bcright3]"""324 if sim_type == "ramp_and_hold_simple_shear":325 print "in simple shear bcs"326 bcleft= DirichletBC(W.sub(0), Constant((0.0,0.0,0.0)), facetboundaries, 1) # u1 = 0 on left face327 bcright= DirichletBC(W.sub(0).sub(1), expr["u_D"], facetboundaries, 2)328 bcright_x = DirichletBC(W.sub(0).sub(0), Constant((0.0)), facetboundaries, 2)329 bcright_z = DirichletBC(W.sub(0).sub(2), Constant((0.0)), facetboundaries, 2)330 bclower= DirichletBC(W.sub(0).sub(2), Constant((0.0)), facetboundaries, 4) # u3 = 0 on lower face331 bctop = DirichletBC(W.sub(0).sub(2), Constant((0.0)), facetboundaries, 6)332 bcs = [bcleft, bcright, bcright_x,bclower]333 if sim_type == "ramp_and_hold_biaxial":334 bcleft= DirichletBC(W.sub(0).sub(0), Constant((0.0)), facetboundaries, 1) # u1 = 0 on left face335 bcright= DirichletBC(W.sub(0).sub(0), expr["u_D"], facetboundaries, 2)336 bclower= DirichletBC(W.sub(0).sub(2), Constant((0.0)), facetboundaries, 4) # u3 = 0 on lower face337 bctop = DirichletBC(W.sub(0).sub(2), expr["u_front"], facetboundaries, 6)338 bcback = DirichletBC(W.sub(0).sub(1), expr["u_D"], facetboundaries, 7)339 bcfront = DirichletBC(W.sub(0).sub(1), Constant((0.0)), facetboundaries,5)340 bcfix = DirichletBC(W.sub(0), Constant((0.0, 0.0, 0.0)), fix, method="pointwise") # at one vertex u = v = w = 0341 bcs = [bcleft, bcfront,bcback,bctop,bcright]342 if sim_type == "traction_hold":343 print "traction simulation"344 # Similar to cylinder but without fixing displacement along y and z axes to prevent rotation345 bcleft= DirichletBC(W.sub(0).sub(0), Constant((0.0)), facetboundaries, 1) # u1 = 0 on left face346 bcright= DirichletBC(W.sub(0).sub(0), expr["u_D"], facetboundaries, 2)347 bcfix = DirichletBC(W.sub(0), Constant((0.0, 0.0, 0.0)), fix, method="pointwise") # at one vertex u = v = w = 0348 bclower= DirichletBC(W.sub(0).sub(2), Constant((0.0)), facetboundaries, 4) # u3 = 0 on lower face349 bcfront= DirichletBC(W.sub(0).sub(1), Constant((0.0)), facetboundaries, 5) # u2 = 0 on front face350 bcfix2 = DirichletBC(W.sub(0).sub(0), Constant((0.0)),fix2,method="pointwise")351 bcfix22 = DirichletBC(W.sub(0).sub(1), Constant((0.0)),fix2,method="pointwise")352 bcfix3 = DirichletBC(W.sub(0).sub(0), Constant((0.0)),fix3,method="pointwise")353 bcfix33 = DirichletBC(W.sub(0).sub(2), Constant((0.0)),fix3,method="pointwise")354 bcs = [bcleft,bcfix,bcfix22,bcfix33] #order matters!355 if sim_type == "work_loop":356 marker_space = FunctionSpace(mesh,'CG',1)357 bc_right_test = DirichletBC(marker_space,Constant(1),facetboundaries,2)358 test_marker_fcn = Function(marker_space) # this is what we need to grab the displacement after potential shortening359 bc_right_test.apply(test_marker_fcn.vector())360 output["test_marker_fcn"] = test_marker_fcn361 #print "KURTIS LOOK HERE, ASSIGNING PROTOCOL ARRAY"362 protocol["end_disp_array"] = np.zeros(int(protocol["simulation_duration"][0]/protocol["simulation_timestep"][0]))363 if sim_geometry == "unit_cube":364 bcleft= DirichletBC(W.sub(0).sub(0), Constant((0.0)), facetboundaries, 1) # u1 = 0 on left face365 bcright= DirichletBC(W.sub(0).sub(0), expr["u_D"], facetboundaries, 2)366 bcfix = DirichletBC(W.sub(0), Constant((0.0, 0.0, 0.0)), fix, method="pointwise") # at one vertex u = v = w = 0367 bclower= DirichletBC(W.sub(0).sub(2), Constant((0.0)), facetboundaries, 4) # u3 = 0 on lower face368 bcfront= DirichletBC(W.sub(0).sub(1), Constant((0.0)), facetboundaries, 5)369 bcs = [bcleft,bcfix,bclower,bcright]370 if sim_type == "stress_strain_loop":371 marker_space = FunctionSpace(mesh,'CG',1)372 bc_right_test = DirichletBC(marker_space,Constant(1),facetboundaries,2)373 test_marker_fcn = Function(marker_space) # this is what we need to grab the displacement after potential shortening374 bc_right_test.apply(test_marker_fcn.vector())375 output["test_marker_fcn"] = test_marker_fcn376 #print "KURTIS LOOK HERE, ASSIGNING PROTOCOL ARRAY"377 protocol["previous_end_disp"] = 0.0378 protocol["diastole"] = 1379 protocol["isovolumic"] = 0380 protocol["ejection"] = 0381 if sim_geometry == "unit_cube":382 bcleft= DirichletBC(W.sub(0).sub(0), Constant((0.0)), facetboundaries, 1) # u1 = 0 on left face383 bcright= DirichletBC(W.sub(0).sub(0), expr["u_D"], facetboundaries, 2)384 bcfix = DirichletBC(W.sub(0), Constant((0.0, 0.0, 0.0)), fix, method="pointwise") # at one vertex u = v = w = 0385 bclower= DirichletBC(W.sub(0).sub(2), Constant((0.0)), facetboundaries, 4) # u3 = 0 on lower face386 bcfront= DirichletBC(W.sub(0).sub(1), Constant((0.0)), facetboundaries, 5)387 bcs = [bcleft,bcfix,bclower]388 output["bcs"] = bcs...
modbus-sma-SBn_n-1AV-40.py
Source:modbus-sma-SBn_n-1AV-40.py
1# Supported hardware and firmware:2# Sunny Boy 3.0 / 3.6 / 4.0 / 5.03# Sunny Boy: SB3.0-1AV-40 / SB3.6-1AV-40 / SB4.0-1AV-40 / SB5.0-1AV-404# Starting with software package: 01.03.04.R5# Full list of readable registers - comment out registers you aren't interested in for faster performance6#7# Descriptions generated by using the following formula in SMA_Modbus-TI-en-26.xlsx - available from SMA web site8# =" ['"&A3&" - "&IFERROR(LEFT(B3,FIND(":",B3)-1),B3)&IF(C3<>""," ("&C3&")","")&"',"&A3&",'"&D3&"','"&E3&"'],"9#10# Note: The following manual updates were made:11# * Updates from STR32 to STR16 as the SMA doco appears to be wrong for 31017, 31025, 31033, 31041, 40159, 40167, 40175 and 4051312# * Remove extended characters from temperatures in 30953, 34109 and 3411313# * Comment out write only registers: 40015, 40016, 40018, 40022, 40023, 40024, 40025 and 4099914sma_registers = [15 ['30051 - Device class',30051,'U32','ENUM'],16 ['30053 - Device type',30053,'U32','ENUM'],17 ['30057 - Serial number',30057,'U32','RAW'],18 ['30059 - Software package',30059,'U32','FW'],19 ['30199 - Waiting time until feed-in (s)',30199,'U32','Duration'],20 ['30201 - Condition',30201,'U32','ENUM'],21 ['30203 - Nominal power in Ok Mode (W)',30203,'U32','FIX0'],22 ['30205 - Nominal power in Warning Mode (W)',30205,'U32','FIX0'],23 ['30207 - Nominal power in Fault Mode (W)',30207,'U32','FIX0'],24 ['30211 - Recommended action',30211,'U32','ENUM'],25 ['30213 - Message',30213,'U32','ENUM'],26 ['30215 - Fault correction measure',30215,'U32','ENUM'],27 ['30217 - Grid relay/contactor',30217,'U32','ENUM'],28 ['30225 - Insulation resistance (Ohms)',30225,'U32','FIX0'],29 ['30231 - Maximum active power device (W)',30231,'U32','FIX0'],30 ['30233 - Set active power limit (W)',30233,'U32','FIX0'],31 ['30247 - Current event number for manufacturer',30247,'U32','FIX0'],32 ['30513 - Total yield (Wh)',30513,'U64','FIX0'],33 ['30517 - Daily yield (Wh)',30517,'U64','FIX0'],34 ['30521 - Operating time (s)',30521,'U64','Duration'],35 ['30525 - Feed-in time (s)',30525,'U64','Duration'],36 ['30529 - Total yield (Wh)',30529,'U32','FIX0'],37 ['30531 - Total yield (kWh)',30531,'U32','FIX0'],38 ['30533 - Total yield (MWh)',30533,'U32','FIX0'],39 ['30535 - Daily yield (Wh)',30535,'U32','FIX0'],40 ['30537 - Daily yield (kWh)',30537,'U32','FIX0'],41 ['30539 - Daily yield (MWh)',30539,'U32','FIX0'],42 ['30541 - Operating time (s)',30541,'U32','Duration'],43 ['30543 - Feed-in time (s)',30543,'U32','Duration'],44 ['30559 - Number of events for user',30559,'U32','FIX0'],45 ['30561 - Number of events for installer',30561,'U32','FIX0'],46 ['30563 - Number of events for service',30563,'U32','FIX0'],47 ['30581 - Grid reference counter reading (Wh)',30581,'U32','FIX0'],48 ['30583 - Grid feed-in counter reading (Wh)',30583,'U32','FIX0'],49 ['30599 - Number of grid connections',30599,'U32','FIX0'],50 ['30769 - DC current input [1] (A)',30769,'S32','FIX3'],51 ['30771 - DC voltage input [1] (V)',30771,'S32','FIX2'],52 ['30773 - DC power input [1] (W)',30773,'S32','FIX0'],53 ['30775 - Power (W)',30775,'S32','FIX0'],54 ['30783 - Grid voltage phase L1 (V)',30783,'U32','FIX2'],55 ['30785 - Grid voltage phase L2 (V)',30785,'U32','FIX2'],56 ['30787 - Grid voltage phase L3 (V)',30787,'U32','FIX2'],57 ['30803 - Grid frequency (Hz)',30803,'U32','FIX2'],58 ['30805 - Reactive power (VAr)',30805,'S32','FIX0'],59 ['30813 - Apparent power (VA)',30813,'S32','FIX0'],60 ['30823 - Excitation type of cosPhi',30823,'U32','ENUM'],61 ['30825 - Operating mode of stat.V stab., stat.V stab. config.',30825,'U32','ENUM'],62 ['30829 - Reactive power set value as a % (%)',30829,'S32','FIX1'],63 ['30831 - cosPhi setpoint, cosPhi config., direct specif.',30831,'S32','FIX2'],64 ['30833 - cosPhi excit.type, cosPhi config., direct spec.',30833,'U32','ENUM'],65 ['30835 - Operating mode of feed-in management',30835,'U32','ENUM'],66 ['30837 - Active power limitation P, active power configuration (W)',30837,'U32','FIX0'],67 ['30839 - Active power limitation P, active power configuration (%)',30839,'U32','FIX0'],68 ['30865 - Power grid reference (W)',30865,'S32','FIX0'],69 ['30867 - Power grid feed-in (W)',30867,'S32','FIX0'],70 ['30925 - Connection speed of SMACOM A',30925,'U32','ENUM'],71 ['30927 - Duplex mode of SMACOM A',30927,'U32','ENUM'],72 ['30929 - Speedwire connection status of SMACOM A',30929,'U32','ENUM'],73 ['30949 - Displacement power factor ',30949,'U32','FIX3'],74 ['30953 - Internal temperature (C)',30953,'S32','TEMP'],75 ['30957 - DC current input [2] (A)',30957,'S32','FIX3'],76 ['30959 - DC voltage input [2] (V)',30959,'S32','FIX2'],77 ['30961 - DC power input [2] (W)',30961,'S32','FIX0'],78 ['30975 - Intermediate circuit voltage (V)',30975,'S32','FIX2'],79 ['30977 - Grid current phase L1 (A)',30977,'S32','FIX3'],80 ['30979 - Grid current phase L2 (A)',30979,'S32','FIX3'],81 ['30981 - Grid current phase L3 (A)',30981,'S32','FIX3'],82 ['31017 - Current speedwire IP address',31017,'STR16','UTF8'],83 ['31025 - Current speedwire subnet mask',31025,'STR16','UTF8'],84 ['31033 - Current speedwire gateway address',31033,'STR16','UTF8'],85 ['31041 - Current speedwire DNS server address',31041,'STR16','UTF8'],86 ['31085 - Nominal power in Ok Mode (W)',31085,'U32','FIX0'],87 ['31247 - Residual current (A)',31247,'S32','FIX3'],88 ['34109 - Heat sink temperature (C)',34109,'S32','TEMP'],89 ['34113 - Internal temperature (C)',34113,'S32','TEMP'],90 ['35377 - Number of events for user',35377,'U64','FIX0'],91 ['35381 - Number of events for installer',35381,'U64','FIX0'],92 ['35385 - Number of events for service',35385,'U64','FIX0'],93 ['40003 - Time zone',40003,'U32','ENUM'],94 ['40005 - Standard/Daylight saving time conversion on',40005,'U32','ENUM'],95 ['40009 - Operating condition',40009,'U32','ENUM'],96 ['40013 - Language of the user interface',40013,'U32','ENUM'],97# ['40015 - Normalized reactive power limitation by PV system ctrl (%)',40015,'S16','FIX1'], # Write only98# ['40016 - Normalized active power limitation by PV system ctrl (%)',40016,'S16','FIX0'], # Write only99# ['40018 - Fast shut-down',40018,'U32','ENUM'], # Write only100# ['40022 - Normalized reactive power limitation by PV system ctrl (%)',40022,'S16','FIX2'], # Write only101# ['40023 - Normalized active power limitation by PV system ctrl (%)',40023,'S16','FIX2'], # Write only102# ['40024 - Dis.pow.factor that can be changed via PV system ctrl',40024,'U16','FIX4'], # Write only103# ['40025 - Excitation type that can be changed by PV system ctrl',40025,'U32','ENUM'], # Write only104 ['40063 - Firmware version of the main processor',40063,'U32','FW'],105 ['40067 - Serial number',40067,'U32','RAW'],106 ['40109 - Country standard set',40109,'U32','ENUM'],107 ['40133 - Grid nominal voltage (V)',40133,'U32','FIX0'],108 ['40135 - Nominal frequency (Hz)',40135,'U32','FIX2'],109 ['40157 - Automatic speedwire configureation switched on',40157,'U32','ENUM'],110 ['40159 - Speedwire IP address',40159,'STR16','IP4'],111 ['40167 - Speedwire subnet mask',40167,'STR16','IP4'],112 ['40175 - Speedwire gateway address',40175,'STR16','IP4'],113 ['40183 - Phase assignment',40183,'U32','ENUM'],114 ['40185 - Maximum apparent power device (VA)',40185,'U32','FIX0'],115 ['40195 - Currently set apparent power limit (VA)',40195,'U32','FIX0'],116 ['40200 - Operating mode of stat.V stab., stat.V stab. config.',40200,'U32','ENUM'],117 ['40204 - Reactive power set value as a % (%)',40204,'S32','FIX1'],118 ['40206 - cosPhi setpoint, cosPhi config., direct specif.',40206,'S32','FIX2'],119 ['40208 - cosPhi excit.type, cosPhi config., direct spec.',40208,'U32','ENUM'],120 ['40210 - Operating mode of feed-in management',40210,'U32','ENUM'],121 ['40212 - Active power limitation P, active power configuration (W)',40212,'U32','FIX0'],122 ['40214 - Active power limitation P, active power configuration (%)',40214,'U32','FIX0'],123 ['40216 - Operating mode of active power reduction in case of overfrequency P(f)',40216,'U32','ENUM'],124 ['40218 - Difference between starting frequency and grid frequency, linear instantaneous power gradient configuration (Hz)',40218,'U32','FIX2'],125 ['40220 - Difference between reset frequency and grid frequency, linear instantaneous power gradient configuration (Hz)',40220,'U32','FIX2'],126 ['40222 - cosPhi at start point, cosPhi(P) char. config.',40222,'U32','FIX2'],127 ['40224 - Excit. type at start point, cosPhi(P) char. conf.',40224,'U32','ENUM'],128 ['40226 - cosPhi at end point, cosPhi(P) char. config.',40226,'U32','FIX2'],129 ['40228 - Excit. type at end point, cosPhi(P) char. config.',40228,'U32','ENUM'],130 ['40230 - Act. power at start point, cosPhi(P) char. config. (%)',40230,'U32','FIX0'],131 ['40232 - Act. power at end point, cosPhi(P) char. config. (%)',40232,'U32','FIX0'],132 ['40238 - Active power gradient, linear instantaneous power gradient configuration (%)',40238,'U32','FIX0'],133 ['40240 - Activation of stay-set indicator function, linear instantaneous power gradient configuration',40240,'U32','ENUM'],134 ['40242 - Active power gradient after reset frequency, linear instantaneous power gradient configuration (%)',40242,'U32','FIX0'],135 ['40428 - Frequency monitoring median maximum threshold (Hz)',40428,'U32','FIX2'],136 ['40430 - Frq. monitoring median max. threshold trip. time (ms)',40430,'U32','FIX0'],137 ['40432 - Frequency monitoring lower maximum threshold (Hz)',40432,'U32','FIX2'],138 ['40434 - Frq. monitoring lower max. threshold trip. time (ms)',40434,'U32','FIX0'],139 ['40436 - Frequency monitoring upper minimum threshold (Hz)',40436,'U32','FIX2'],140 ['40438 - Frq. monitoring upper min. threshold trip. time (ms)',40438,'U32','FIX0'],141 ['40440 - Frequency monitoring median minimum threshold (Hz)',40440,'U32','FIX2'],142 ['40442 - Frq. monitoring median min. threshold trip. time (ms)',40442,'U32','FIX0'],143 ['40448 - Voltage monitoring median maximum threshold (V)',40448,'U32','FIX2'],144 ['40450 - Voltage monitoring median max. threshold trip.time (ms)',40450,'U32','FIX0'],145 ['40452 - Voltage monitoring lower maximum threshold (V)',40452,'U32','FIX2'],146 ['40456 - Voltage monitoring lower max. threshold trip. time (ms)',40456,'U32','FIX0'],147 ['40458 - Voltage monitoring lower minimum threshold (V)',40458,'U32','FIX2'],148 ['40462 - Voltage monitoring lower min. threshold trip. time (ms)',40462,'U32','FIX0'],149 ['40464 - Voltage monitoring of median minimum threshold (V)',40464,'U32','FIX2'],150 ['40466 - Voltage monitoring median min. threshold trip.time (ms)',40466,'U32','FIX0'],151 ['40470 - Island network detect. status',40470,'U32','ENUM'],152 ['40484 - Activation of active power gradient',40484,'U32','ENUM'],153 ['40497 - MAC address',40497,'STR32','UTF8'],154 ['40513 - Speedwire DNS server address',40513,'STR16','IP4'],155 ['40631 - Device name',40631,'STR32','UTF8'],156 ['40789 - Communication version',40789,'U32','REV'],157 ['40915 - Set active power limit (W)',40915,'U32','FIX0'],158# ['40999 - Setpoint cos(phi) as per EEI convention',40999,'S32','FIX4'], # Write only159 ['41017 - Adjustment time of characteristic operating point, conf. of grid integr. char. 1 (s)',41017,'U32','FIX1'],160 ['41023 - Number of points to be used, conf. of grid integr. char. 1',41023,'U32','FIX0'],161 ['41025 - X-axes reference, conf. of grid integration char. 1',41025,'U32','ENUM'],162 ['41027 - Y-axes reference, conf. of grid integration char. 1',41027,'U32','ENUM'],163 ['41029 - X value 1, conf. of grid integr. char. 1',41029,'S32','FIX3'],164 ['41031 - Y value 1, conf. of grid integr. char. 1',41031,'S32','FIX3'],165 ['41033 - X value 2, conf. of grid integr. char. 1',41033,'S32','FIX3'],166 ['41035 - Y value 2, conf. of grid integr. char. 1',41035,'S32','FIX3'],167 ['41037 - X value 3, conf. of grid integr. char. 1',41037,'S32','FIX3'],168 ['41039 - Y value 3, conf. of grid integr. char. 1',41039,'S32','FIX3'],169 ['41041 - X value 4, conf. of grid integr. char. 1',41041,'S32','FIX3'],170 ['41043 - Y value 4, conf. of grid integr. char. 1',41043,'S32','FIX3'],171 ['41061 - 2nd characteristic curve number, configuration of characteristic curve mode',41061,'U32','FIX0'],172 ['41063 - 2nd activation of the characteristic curve, configuration of characteristic curve mode',41063,'U32','ENUM'],173 ['41065 - Adjustment time of char. operating point, conf. of grid integration char. 2 (s)',41065,'U32','FIX1'],174 ['41071 - Number of points to be used, conf. of grid integr. char. 2',41071,'U32','FIX0'],175 ['41073 - Input unit, conf. of grid integration char. 2',41073,'U32','ENUM'],176 ['41075 - Output frequency, conf. of grid integration char. 2',41075,'U32','ENUM'],177 ['41077 - X value 1, conf. of grid integr. char. 2',41077,'S32','FIX3'],178 ['41079 - Y value 1, conf. of grid integr. char. 2',41079,'S32','FIX3'],179 ['41081 - X value 2, conf. of grid integr. char. 2',41081,'S32','FIX3'],180 ['41083 - Y value 2, conf. of grid integr. char. 2',41083,'S32','FIX3'],181 ['41085 - X value 3, conf. of grid integr. char. 2',41085,'S32','FIX3'],182 ['41087 - Y value 3, conf. of grid integr. char. 2',41087,'S32','FIX3'],183 ['41089 - X value 4, conf. of grid integr. char. 2',41089,'S32','FIX3'],184 ['41091 - Y value 4, conf. of grid integr. char. 2',41091,'S32','FIX3'],185 ['41111 - Voltage monitoring of lower minimum threshold as RMS value (V)',41111,'U32','FIX2'],186 ['41113 - Voltage monitoring of lower min.threshold as RMS value for tripping time (ms)',41113,'U32','FIX0'],187 ['41115 - Voltage monitoring of upper maximum threshold as RMS value (V)',41115,'U32','FIX2'],188 ['41117 - Voltage monitoring of upper max. thresh. as RMS value for tripping time (ms)',41117,'U32','FIX0'],189 ['41121 - Set country standard',41121,'U32','FUNKTION_SEC'],190 ['41123 - Min. voltage for reconnection (V)',41123,'U32','FIX2'],191 ['41125 - Max. voltage for reconnection (V)',41125,'U32','FIX2'],192 ['41127 - Lower frequency for reconnection (Hz)',41127,'U32','FIX2'],193 ['41129 - Upper frequency for reconnection (Hz)',41129,'U32','FIX2'],194 ['41169 - Minimum insulation resistance (Ohms)',41169,'U32','FIX0'],195 ['41171 - Set total yield (kWh)',41171,'U32','FIX0'],196 ['41173 - Set total operating time at grid connection point (h)',41173,'U32','Duration'],197 ['41193 - Operating mode for absent active power limitation',41193,'U32','ENUM'],198 ['41195 - Timeout for absent active power limitation (s)',41195,'U32','Duration'],199 ['41197 - Fallback act power lmt P in % of WMax for absent act power lmt (%)',41197,'U32','FIX2'],200 ['41199 - Set active power limit at grid connection point (%)',41199,'U32','FIX0'],201 ['41203 - Nominal PV system power (W)',41203,'U32','FIX0'],202 ['41217 - Set active power limit at grid connection point (W)',41217,'U32','FIX0'],203 ['41219 - Operating mode for absent reactive power control',41219,'U32','ENUM'],204 ['41221 - Timeout for absent reactive power control (s)',41221,'U32','Duration'],205 ['41223 - Fallback react power Q in % of WMax for absent react power ctr (%)',41223,'S32','FIX2'],206 ['41225 - Operating mode for absent cos Phi spec',41225,'U32','ENUM'],207 ['41227 - Timeout for absent cos Phi spec (s)',41227,'U32','Duration'],208 ['41229 - Fallback cos Phi for absent cos Phi spec',41229,'S32','FIX4'],209 ['41253 - Fast shut-down',41253,'U32','ENUM'],210 ['41255 - Normalized active power limitation by PV system ctrl (%)',41255,'S16','FIX2'],211 ['41256 - Normalized reactive power limitation by PV system ctrl (%)',41256,'S16','FIX2'],212 ['41257 - Setpoint cos(phi) as per EEI convention',41257,'S32','FIX4'],213 ['43090 - Login with Grid Guard-Code',43090,'U32','FIX0']214 ]215# scan is not used for SMA inverters but solariot.py expects it to exist...
test_tutorial_macros.py
Source:test_tutorial_macros.py
1import numpy as np2import pandas as pd3from eskapade import process_manager, resources, DataStore4from eskapade_python.bases import TutorialMacrosTest5class DataQualityTutorialMacrosTest(TutorialMacrosTest):6 """Integration tests based on data quality tutorial macros"""7 def test_esk501(self):8 """Test Esk-501: fixing pandas dataframe"""9 # run Eskapade10 self.eskapade_run(resources.tutorial('esk501_fix_pandas_dataframe.py'))11 ds = process_manager.service(DataStore)12 self.assertIn('vrh', ds)13 self.assertIn('vrh_fix1', ds)14 self.assertIn('vrh_fix2', ds)15 self.assertIn('vrh_fix3', ds)16 self.assertIsInstance(ds['vrh'], pd.DataFrame)17 self.assertIsInstance(ds['vrh_fix1'], pd.DataFrame)18 self.assertIsInstance(ds['vrh_fix2'], pd.DataFrame)19 self.assertIsInstance(ds['vrh_fix3'], pd.DataFrame)20 self.assertEqual(len(ds['vrh'].index), 5)21 self.assertEqual(len(ds['vrh_fix1'].index), 5)22 self.assertEqual(len(ds['vrh_fix2'].index), 5)23 self.assertEqual(len(ds['vrh_fix3'].index), 5)24 self.assertIsInstance(ds['vrh']['B'].dtype, np.object)25 self.assertIsInstance(ds['vrh']['C'].dtype, np.object)26 self.assertIsInstance(ds['vrh']['D'].dtype.type(), np.float64)27 self.assertListEqual(ds['vrh']['A'].values.tolist(), [True, False, np.nan, np.nan, np.nan])28 self.assertListEqual(ds['vrh']['B'].values.tolist(), ['foo', 'bar', '3', np.nan, np.nan])29 self.assertListEqual(ds['vrh']['C'].values.tolist(), ['1.0', '2.0', 'bal', np.nan, np.nan])30 self.assertListEqual(ds['vrh']['D'].values.tolist()[:3], [1.0, 2.0, 3.0])31 self.assertListEqual(ds['vrh']['E'].values.tolist(), ['1', '2', 'bla', np.nan, np.nan])32 self.assertListEqual(ds['vrh']['F'].values.tolist(), ['1', '2.5', 'bar', np.nan, np.nan])33 self.assertListEqual(ds['vrh']['G'].values.tolist(), ['a', 'b', 'c', 'd', np.nan])34 self.assertListEqual(ds['vrh']['H'].values.tolist(), ['a', 'b', '1', '2', '3'])35 self.assertListEqual(ds['vrh_fix1']['A'].values.tolist()[:2], [1.0, 0.0])36 self.assertListEqual(ds['vrh_fix1']['B'].values.tolist(), ['foo', 'bar', '3', np.nan, np.nan])37 self.assertListEqual(ds['vrh_fix1']['C'].values.tolist()[:2], [1.0, 2.0])38 self.assertListEqual(ds['vrh_fix1']['D'].values.tolist()[:3], [1.0, 2.0, 3.0])39 self.assertListEqual(ds['vrh_fix1']['E'].values.tolist()[:2], [1, 2])40 self.assertListEqual(ds['vrh_fix1']['F'].values.tolist()[:3], ['1', '2.5', 'bar'])41 self.assertListEqual(ds['vrh_fix1']['G'].values.tolist(), ['a', 'b', 'c', 'd', np.nan])42 self.assertListEqual(ds['vrh_fix1']['H'].values.tolist()[2:5], [1.0, 2.0, 3.0])43 self.assertListEqual(ds['vrh_fix2']['B'].values.tolist()[2:3], [3])44 self.assertListEqual(ds['vrh_fix2']['C'].values.tolist(), ['1.0', '2.0', 'bal', np.nan, np.nan])45 self.assertListEqual(ds['vrh_fix3']['A'].values.tolist()[:2], [1.0, 0.0])46 self.assertListEqual(ds['vrh_fix3']['B'].values.tolist(), ['foo', 'bar', '3', 'not_a_str', 'not_a_str'])47 self.assertListEqual(ds['vrh_fix3']['C'].values.tolist()[:2], [1.0, 2.0])48 self.assertListEqual(ds['vrh_fix3']['D'].values.tolist()[:3], [1.0, 2.0, 3.0])49 self.assertListEqual(ds['vrh_fix3']['E'].values.tolist(), [1, 2, -999, -999, -999])50 self.assertListEqual(ds['vrh_fix3']['F'].values.tolist(), ['1', '2.5', 'bar', 'not_a_str', 'not_a_str'])51 self.assertListEqual(ds['vrh_fix3']['G'].values.tolist(), ['a', 'b', 'c', 'd', 'GREPME'])...
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