Best Python code snippet using hypothesis
data.py
Source:data.py
...208 This has the slightly weird result that we are defining nested209 classes which get turned into properties."""210 name = cls.__name__211 cache_name = "__" + name212 def lazy_calculate(self):213 result = getattr(self, cache_name, None)214 if result is None:215 result = cls(self).run()216 setattr(self, cache_name, result)217 return result218 lazy_calculate.__name__ = cls.__name__219 lazy_calculate.__qualname__ = getattr(cls, "__qualname__", cls.__name__)220 return property(lazy_calculate)221DRAW_BITS_RECORD = 0222STOP_EXAMPLE_DISCARD_RECORD = 1223STOP_EXAMPLE_NO_DISCARD_RECORD = 2224START_EXAMPLE_RECORD = 3225class ExampleRecord:226 """Records the series of ``start_example``, ``stop_example``, and...
data_handler.py
Source:data_handler.py
...23 self.num_seqs = len(self.seqs)24 # GET WEIGHTS FOR SEQUENCES25 seq_log_path = make_path('seq_weights.pkl')26 logging.info("CALCULATING SEQ WEIGHTS")27 self.seq_weights = tools.lazy_calculate(self.calc_seq_weights, seq_log_path)28 # GET CLUSTERS FOR SEQUENCES29 cluster_path = make_path('clusters_{}.pkl'.format(tools.n_clusters))30 self.seq_clusters = tools.lazy_calculate(self.cluster_seqs, cluster_path)31 # SELECT TEST AND TRAIN SET32 test_id_path = make_path(os.path.join(run_time, 'test_ids.pkl'))33 self.test_idx = tools.lazy_calculate(self.choose_test_set, test_id_path)34 self.train_idx = list(set(np.arange(self.num_seqs)) - set(self.test_idx))35 self.test_size = len(self.test_idx)36 self.train_size = len(self.train_idx)37 # DICTIONARIES TO KEEP TRACK OF WHICH INDICES HAVE BEEN USED IN A GIVEN EPOCH38 self.unused_test_idx = dict(zip(self.test_idx, self.seq_weights[self.test_idx]))39 self.unused_train_idx = dict(zip(self.train_idx, self.seq_weights[self.train_idx]))40 # Remove gaps41 if not use_full_seqs:42 self.seqs = tools.remove_gaps(self.seqs)43 # Re-adjust the max sequence length44 self.max_seq_len = max(len(seq) for seq in self.seqs.values())45 # GET DIST OF FIRST ELEMENT OF SEQS (for generation purposes)46 seed_weight_path = make_path('seed_weights.pkl')47 self.seed_weights = self.calc_seed_weights()...
tools.py
Source:tools.py
...20# HYPER PARAMETERS21similarity_cutoff = 0.222n_clusters = 5023# HELPER FUNCTIONS24def lazy_calculate(function, path):25 if os.path.exists(path):26 with open(path) as f:27 return pickle.load(f)28 else:29 data = function()30 with open(path, 'w') as f:31 pickle.dump(data, f)32 return data33 return wrapper34def get_alignment_filename(gene):35 for filename in os.listdir('alignments'):36 if filename.startswith(gene):37 return filename38def get_results_filename(gene):...
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