Join the 1-day Testing & QA Summit featuring 15+ Expert Speakers.Register for FREE! Join TestMu Conference

How to use testCoverageDetection method in green

Best Python code snippet using green

test_coverage_detection.py

Source:test_coverage_detection.py

1import sys2import math3import csv4import os5import unittest6from io import StringIO7sys.path.append(".")8import annogesiclib.coverage_detection as cover_detect9from mock_args_container import MockClass10class Mock_func(object):11    def mock_check_tex(self, template_texs, covers, target_datas, cutoff,12                       tex_notex, poss, type_, notex, median,13                       coverages, utr_type):14        for srna in Example().cover_datas:15            target_datas.append(srna)16        poss["start"] = 10017        poss["end"] = 20218        return 219class TestCoverageDetection(unittest.TestCase):20    def setUp(self):21        self.example = Example()22        self.mock_args = MockClass()23    def test_coverage_comparison_first(self):24        first = True25        cover_sets = {"high": -1, "low": -1}26        poss = {"high": -1, "low": -1}27        cover = 10028        cover_detect.coverage_comparison(29            cover, cover_sets, poss, first, "+", 50)30        self.assertDictEqual(cover_sets, {"high": 100, "low": 100})31        self.assertDictEqual(poss, {"high": 50, "low": 50})32        33    def test_coverage_comparison_forward(self):34        first = False35        cover_sets = {"high": 50, "low": 20}36        poss = {"high": 10, "low": 30}37        cover = 10038        cover_detect.coverage_comparison(39            cover, cover_sets, poss, first, "+", 50)40        self.assertDictEqual(cover_sets, {"high": 100, "low": 100})41        self.assertDictEqual(poss, {"high": 50, "low": 50})42        cover = 3043        cover_detect.coverage_comparison(44            cover, cover_sets, poss, first, "+", 51)45        self.assertDictEqual(cover_sets, {"high": 100, "low": 30})46        self.assertDictEqual(poss, {"high": 50, "low": 51})47    def test_coverage_comparison_reverse(self):48        first = False49        cover_sets = {"high": 50, "low": 20}50        poss = {"high": 30, "low": 10}51        cover = 10052        cover_detect.coverage_comparison(53            cover, cover_sets, poss, first, "-", 50)54        self.assertDictEqual(cover_sets, {"high": 100, "low": 100})55        self.assertDictEqual(poss, {"high": 50, "low": 50})56        cover = 3057        cover_detect.coverage_comparison(58            cover, cover_sets, poss, first, "-", 49)59        self.assertDictEqual(cover_sets, {"high": 100, "low": 30})60        self.assertDictEqual(poss, {"high": 50, "low": 49})61    def test_define_cutoff_median(self):62        coverages = {"3utr": "mean", "5utr": "median"}63        median = {"track_a": {"median": 100, "mean": 200},64                  "track_b": {"median": 30, "mean": 80}}65        cutoff = cover_detect.define_cutoff(coverages, median, "5utr")66        self.assertDictEqual(cutoff, {'track_a': 100, 'track_b': 30})67        cutoff = cover_detect.define_cutoff(coverages, median, "3utr")68        self.assertDictEqual(cutoff, {'track_a': 200, 'track_b': 80})69    def test_check_tex(self):70        template_texs = self.example.texs71        covers = self.example.cover_datas72        coverages = {"3utr": 100, "5utr": 600}73        poss = {"high": 30, "low": 10}74        median = {"track1_tex": {"median": 100, "mean": 200},75                  "track1_notex": {"median": 30, "mean": 80},76                  "track2_tex": {"median": 150, "mean": 200},77                  "track2_notex": {"median": 10, "mean": 20},78                  "frag": {"median": 80, "mean": 100}}79        target_datas = []80        texs = {"track1_tex@AND@track1_notex": 0,81                "track2_tex@AND@track2_notex": 0}82        detect_num_lib = cover_detect.check_tex(83            template_texs, covers, target_datas, 20, None, poss, median,84            coverages, "3utr", 200, 2)85        self.assertEqual(detect_num_lib, 2)86        num_frag = 087        num_tex = 088        for target in target_datas:89            if target["type"] == "frag":90                num_frag += 191            else:92                num_tex += 193        self.assertEqual(num_frag, 1)94        self.assertEqual(num_tex, 2)95        detect_num_lib = cover_detect.check_tex(96            template_texs, covers, target_datas, 20, "sRNA_utr_derived",97            poss, median, coverages, "5utr", 200, 2)98        self.assertEqual(detect_num_lib, 2)99        self.assertDictEqual(poss, {100            'start': 100, 'high': 30, 'end': 202, 'low': 10})101    def test_replicate_comparison(self):102        cover_detect.check_tex = Mock_func().mock_check_tex103        template_texs = self.example.texs104        srna_covers = {"texnotex": self.example.cover_datas}105        coverages = {"3utr": 100, "5utr": 600}106        median = {"track1_tex": {"median": 100, "mean": 200},107                  "track1_notex": {"median": 30, "mean": 80},108                  "track2_tex": {"median": 150, "mean": 200},109                  "track2_notex": {"median": 10, "mean": 20},110                  "frag": {"median": 80, "mean": 100}}111        texs = {"track1_tex@AND@track1_notex": 0,112                "track2_tex@AND@track2_notex": 0}113        args = self.mock_args.mock()114        args.replicates = {"tex": ["all_2"], "frag": ["all_1"]}115        args.tex_notex = 2116        srna_datas = cover_detect.replicate_comparison(args, srna_covers, "+",117                     "sRNA_utr_derived", median,118                     coverages, "3utr", 100, 200, template_texs)119        self.assertEqual(srna_datas["best"], 500)120        self.assertEqual(srna_datas["track"], "frag")121        self.assertEqual(srna_datas["high"], 700)122        self.assertEqual(srna_datas["low"], 400)123        self.assertEqual(srna_datas["start"], 100)124        self.assertEqual(srna_datas["end"], 202)125class Example(object):126    cover_datas = [127        {"avg": 300, "type": "tex", "track": "track1_tex",128         "final_start": 100, "final_end": 200, "high": 500, "low": 100},129        {"avg": 300, "type": "notex", "track": "track1_notex",130         "final_start": 100, "final_end": 200, "high": 500, "low": 100},131        {"avg": 10, "type": "tex", "track": "track2_tex",132         "final_start": 101, "final_end": 200, "high": 50, "low": 0},133        {"avg": 10, "type": "notex", "track": "track2_notex",134         "final_start": 101, "final_end": 200, "high": 50, "low": 0},135        {"avg": 500, "type": "frag", "track": "frag",136         "final_start": 100, "final_end": 202, "high": 700, "low": 400}]137    texs = {"track1_tex_track1_notex": 0,138            "track2_tex_track2_notex": 0}139    cutoff = {"track1_tex": 200, "track1_notex": 200,140              "track2_tex": 200, "track2_notex": 200,141              "frag": 200}142if __name__ == "__main__":...

test_output.py

Source:test_output.py

...150        gs = GreenStream(s)151        gs.write = MagicMock()152        gs.writelines(["one", "two", "three"])153        self.assertEqual(len(gs.write.mock_calls), 3)154    def testCoverageDetection(self):155        """156        write() detects a coverage percentage flying by157        """158        s = StringIO()159        gs = GreenStream(s)160        gs.write(161            "\n---------------------------------------------------\nTOTAL                   896    367    59%\nRan"162        )163        self.assertEqual(gs.coverage_percent, 59)164    def testEncodingMirrors(self):165        """166        The encoding of a stream gets mirrored through167        """168        s = StringIO()...

Automation Testing Tutorials

Learn to execute automation testing from scratch with LambdaTest Learning Hub. Right from setting up the prerequisites to run your first automation test, to following best practices and diving deeper into advanced test scenarios. LambdaTest Learning Hubs compile a list of step-by-step guides to help you be proficient with different test automation frameworks i.e. Selenium, Cypress, TestNG etc.