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How to use check_output_files method in avocado

Best Python code snippet using avocado_python

text_eval_test.py

...49    encoder.decode.return_value = "some test decode value."50    text_eval.text_eval(encoder, features, model_dir, 0, "test", enable_logging,51                        **kwargs)52    return model_dir53  def check_output_files(self, model_dir, file_prefixes=_DEFAULT_OUTPUTS):54    for name in file_prefixes:55      filename = os.path.join(model_dir, name + "-0-test.txt")56      self.assertTrue(tf.io.gfile.exists(filename))57    self.assertEqual(58        len(file_prefixes), len(tf.io.gfile.glob(os.path.join(model_dir, "*"))))59  def test_eval(self):60    features = iter([{61        "inputs": np.array([2, 3, 4, 1, 0]),62        "targets": np.array([2, 3, 1, 0]),63        "outputs": np.array([2, 1, 0])64    }])65    self.check_output_files(self.eval(features, True))66  def test_no_logging(self):67    features = iter([{68        "inputs": np.array([2, 3, 4, 1, 0]),69        "targets": np.array([2, 3, 1, 0]),70        "outputs": np.array([2, 1, 0])71    }])72    self.check_output_files(self.eval(features, False), ("text_metrics",))73  def test_2d_inputs(self):74    features = iter([{75        "inputs": np.ones((3, 5)),76        "targets": np.ones((4)),77        "outputs": np.ones((7))78    }])79    self.check_output_files(self.eval(features, True))80  def test_multiple_inputs(self):81    features = iter([{82        "inputs0": np.ones((5)),83        "inputs1": np.ones((5)),84        "inputs2": np.ones((5)),85        "targets": np.ones((4)),86        "outputs": np.ones((7))87    }])88    self.check_output_files(self.eval(features, True))89  def test_selected_ids(self):90    features = iter([{91        "inputs": np.ones((3, 5)),92        "num_inputs": np.array(3).item(),93        "selected_ids": np.array([1, 0]),94        "targets": np.ones((4)),95        "outputs": np.ones((7))96    }])97    self.check_output_files(98        self.eval(features, True, additional_keys=("selected_ids",)),99        _DEFAULT_OUTPUTS + ("selected_ids",))100  def test_addtinal_keys(self):101    features = iter([{102        "inputs": np.ones((3, 5)),103        "key1": np.ones((6, 5)),104        "key2": np.ones((9)),105        "floatkey1": np.ones((9, 3), dtype=np.float32),106        "floatkey2": np.ones((9), dtype=np.float32),107        "targets": np.ones((4)),108        "outputs": np.ones((7))109    }])110    self.check_output_files(111        self.eval(112            features,113            True,114            additional_keys=("key1", "key2", "floatkey1", "floatkey2")),115        _DEFAULT_OUTPUTS + ("key1", "key2", "floatkey1", "floatkey2"))116if __name__ == "__main__":...

integration_antismash.py

Source: integration_antismash.py

...25        destroy_config()26        self.temp_dir.cleanup()27    def test_nisin_minimal(self):28        run_antismash(get_path_to_nisin_genbank(), self.default_options)29        self.check_output_files()30    def check_output_files(self):31        out_dir = self.default_options.output_dir32        assert os.path.exists(out_dir)33        for filename in ["nisin.json", "index.html"]:34            assert os.path.exists(os.path.join(out_dir, filename))35class TestSkipZip(TestAntismash):36    def get_args(self):37        return ["--minimal", "--skip-zip-file"]38    def check_output_files(self):39        super().check_output_files()40        assert not os.path.exists(os.path.join(self.default_options.output_dir, "nisin.zip"))41class TestProfiling(TestAntismash):42    def get_args(self):43        return ["--minimal", "--profiling"]44class TestDebug(TestAntismash):45    def get_args(self):46        return ["--minimal", "-d"]47class TestVerbose(TestAntismash):48    def get_args(self):49        return ["--minimal", "-v"]50class TestLogging(TestAntismash):51    def setUp(self):52        self.logfile = NamedTemporaryFile()53        super().setUp()54    def tearDown(self):55        super().tearDown()56        self.logfile.close()57    def get_args(self):58        return ["--minimal", "-v", "--logfile", os.path.join(self.logfile.name)]59    def check_output_files(self):60        super().check_output_files()61        assert os.path.exists(self.logfile.name)62class TestResultsReuse(TestAntismash):63    def test_nisin_minimal(self):64        # make sure the output directory isn't filled65        out_dir = self.default_options.output_dir66        assert not list(glob.glob(os.path.join(out_dir, "*")))67        # die with neither inputs provided68        with self.assertRaisesRegex(ValueError, "No sequence file or prior results to read"):69            run_antismash(None, self.default_options)70        # make sure no files created71        assert not list(glob.glob(os.path.join(out_dir, "*")))72        # do a normal run73        run_antismash(get_path_to_nisin_genbank(), self.default_options)74        self.check_output_files()75        # remove html file and make sure it's recreated76        os.unlink(os.path.join(self.default_options.output_dir, "index.html"))77        update_config({"reuse_results": os.path.join(self.default_options.output_dir, "nisin.json")})78        run_antismash(None, self.default_options)79        self.check_output_files()80class TestModuleData(unittest.TestCase):81    def test_prepare_module_data(self):82        # make sure there's some to start with83        search = path.get_full_path(antismash.__file__, '**', "*.h3?")84        existing_press_files = glob.glob(search, recursive=True)85        assert existing_press_files86        # then remove them all87        for pressed in existing_press_files:88            os.unlink(pressed)89        current_press_files = glob.glob(search, recursive=True)90        assert not current_press_files91        # and make sure they're all regenerated properly92        prepare_module_data()93        current_press_files = glob.glob(search, recursive=True)...

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