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How to use tasks_path method in autotest
Best Python code snippet using autotest_python
checar
Source:checar 
1#!/usr/bin/python2# -*- coding: utf-8 -*-3import os4import glob5import subprocess6import sys7import argparse8##########################################################################9#Já que não dá pra usar ctrl-c pra parar o script isso simula o getch do C10##########################################################################11class _Getch:12 """Gets a single character from standard input. Does not echo to the13screen."""14 def __init__(self):15 try:16 self.impl = _GetchWindows()17 except ImportError:18 self.impl = _GetchUnix()19 def __call__(self): return self.impl()20 21class _GetchUnix:22 def __init__(self):23 import tty, sys24 def __call__(self):25 import sys, tty, termios26 fd = sys.stdin.fileno()27 old_settings = termios.tcgetattr(fd)28 try:29 tty.setraw(sys.stdin.fileno())30 ch = sys.stdin.read(1)31 finally:32 termios.tcsetattr(fd, termios.TCSADRAIN, old_settings)33 return ch34 35class _GetchWindows:36 def __init__(self):37 import msvcrt38 def __call__(self):39 import msvcrt40 return msvcrt.getch()41 42#############################43#Cria as opções de argumentos44#############################45parser = argparse.ArgumentParser(description='Esse script auxilia no controle de qualidade ' \46 'dos projetos facilitando o processo, principalmente quando o controle é feito para múltiplos sujeitos.')47parser.add_argument('-p', '--project', help='Nome do projeto (completo ou abreviado). Esse argumento é obrigatório.', \48 dest='proj', action='store', required=True)49parser.add_argument('-v', '--visit', help='Especifica o número do diretório visit. Se não for especificado ' \50 'por default, será visit1. Utilize -v 0 caso não haja nenhum diretório visit no projeto.', \51 dest='vis', action='store', type=int, default=1, metavar='[1]')52parser.add_argument('-s','--subject', help='Especifica o(s) sujeito(s) para realizar o controle de qualidade. ' \53 'Se não for especificado, por default, todos serão usados.', \54 dest='subj', nargs='*',default=[])55parser.add_argument('-t', '--task', help='Especifica a(s) tarefa(s) para realizar o controle de qualidade. ' \56 'Se não for especificado, por default, todas serão usadas.', \57 dest='task', nargs='*',default=[])58parser.add_argument('-r', '--review', help='Especifica o tipo de controle de qualidade entre as opções ' \59 '[basic/driver/commands]. Se não for especificado, por default, será usado o [basic].', \60 choices=[ 'basic', 'driver', 'commands' ], dest='rvw', default='basic')61parser.add_argument('-a', '--analise', help='Especifica o tipo de análise ' \62 '[corregistro/ativacao]. Se não for especificado, nenhum é feito.', \63 choices=[ 'corregistro', 'ativacao' ], dest='ana')64args = parser.parse_args()65##############################66#Lista de variáveis aceitáveis67##############################68if args.proj == 'SCH' or args.proj == 'SCHOOLS':69 args.proj = 'SCHOOLS'70 sigla = 'SCH'71 72if args.proj == 'COC' or args.proj == 'PFERREIRA':73 args.proj = 'PFERREIRA'74 sigla = 'COC'75 76if args.proj == 'OB' or args.proj == 'OBESIDADE':77 args.proj = 'OBESIDADE'78 sigla = 'OB'79if args.proj == 'AMBAC':80 sigla = 'AMBAC'81 82if args.proj == 'RWM' or args.proj == 'Rohde_WM':83 args.proj = 'Rohde_WM'84 sigla = 'RWM'85if args.proj == 'CAT' or args.proj == 'MCRUCIUS':86 args.proj = 'MCRUCIUS'87 sigla = 'CAT'88if args.rvw == 'basic':89 args.rvw = 'dados'90elif args.rvw == 'driver':91 args.rvw = 'tcsh @ss_review_driver'92else:93 args.rvw = 'dados-full'94if os.path.isdir("/media/DATA/%s" % args.proj): # Verifica se o projeto existe em DATA95 print ('\nAbrindo '+args.proj+'...')96else:97 print "\n-> Erro: O projeto especificado não existe.\n"98 exit(-1)99#########################################100#Verifica os argumentos e roda os reviews101#########################################102if not args.subj:103 if args.vis == 0:104 tasks = sorted(glob.glob('/media/DATA/'+args.proj+'/'+sigla+'*''/PROC''*'))105 if not tasks:106 print '\nErro -> '+args.proj+' deve conter um diretório visit ou não deve possuir\ndados processados. Verifique.\n'107 exit(-1)108 else:109 for task_paths in tasks:110 print task_paths111 else:112 subjs_paths = sorted(glob.glob('/media/DATA/'+args.proj+'/'+sigla+'*''/visit%d' % +args.vis))113 if not subjs_paths:114 print '\nErro -> '+args.proj+' não possui o diretório visit especificado.'115 print 'OBS: Se não há diretório visit para '+args.proj+', considere usar -v 0.\n'116 exit(-1)117 else:118 for subj_path in subjs_paths:119##################################################################################################################120 if args.ana:121 for task in args.task:122 tasks = sorted(glob.glob(subj_path+'/PROC.'+task+'*'))123 if not tasks:124 print ('\nErro -> Não existe PROC.'+task+' em '+subj_path+'\n')125 for task in args.task:126 tasks = sorted(glob.glob(subj_path+'/PROC.'+task+'*'))127 for task_paths in tasks:128 print ('\nAbrindo review em '+task_paths)129 os.chdir(task_paths)130 subprocess.call(args.ana,shell=True)131 print "Pressione uma tecla para continuar ou 'q' para sair."132 getch = _Getch()133 if getch.impl() in ('q', 'Q'):134 sys.exit(0)135 else:136 pass137##################################################################################################################138 if not args.task:139 tasks = sorted(glob.glob(subj_path+'/PROC''*'))140 if not tasks:141 print ('\nErro -> Não há dados processados em' +subj_path+'\n')142 exit(-1)143 else:144 for task_paths in tasks:145 print ('\nAbrindo review em '+task_paths)146 os.chdir(task_paths)147 subprocess.call(args.rvw, shell=True)148 print "Pressione uma tecla para continuar ou 'q' para sair."149 getch = _Getch()150 if getch.impl() in ('q', 'Q'):151 sys.exit(0)152 else:153 pass 154 else:155 for task in args.task:156 tasks = sorted(glob.glob(subj_path+'/PROC.'+task+'*'))157 if not tasks:158 print ('\nErro -> Não existe PROC.'+task+' em '+subj_path+'\n')159 for task in args.task:160 tasks = sorted(glob.glob(subj_path+'/PROC.'+task+'*'))161 for task_paths in tasks:162 print ('\nAbrindo review em '+task_paths)163 os.chdir(task_paths)164 subprocess.call(args.rvw, shell=True)165 print "Pressione uma tecla para continuar ou 'q' para sair."166 getch = _Getch()167 if getch.impl() in ('q', 'Q'):168 sys.exit(0)169 else:170 pass171elif args.subj:172 for subjs in args.subj:173 print 'For loop'174 path = glob.glob('/media/DATA/'+args.proj+'/'+sigla+'*'+subjs)175 caminho1 = ''.join(path)176 if not os.path.isdir(caminho1):177 print ('\nErro -> '+sigla+'*'+subjs+' não existe! Verifique.\n')178 exit(-1)179 else:180 if args.vis == 0:181 caminho2 = glob.glob('/media/DATA/'+args.proj+'/'+sigla+'*'+subjs)182 subjs_paths = ''.join(caminho2)183 if not os.path.isdir(subjs_paths):184 print '\nErro -> '+sigla+'*'+subjs+' não possui o diretório visit especificado.'185 print 'OBS: Se não há diretório visit para '+sigla+'*'+subjs+', considere usar -v 0.\n'186 exit(-1)187 else:188 tasks = sorted(glob.glob('/media/DATA/'+args.proj+'/'+sigla+'*'+subjs+'/PROC''*'))189 if not tasks:190 print '\nErro -> '+subjs+' deve conter um diretório visit. Verifique.\n'191 else:192 for tasks_path in tasks:193 print tasks_path194 if args.ana:195 for task in args.task:196 tasks = sorted(glob.glob(subjs_paths+'/PROC.'+task+'*'))197 if not tasks:198 print ('\nErro -> Não existe '+task+ ' em '+subjs+'\n')199 exit(-1)200 for task in args.task:201 tasks = sorted(glob.glob(subjs_paths+'/PROC.'+task+'*'))202 for tasks_path in tasks:203 print ('\nAbrindo '+task+' em '+subjs+'...')204 os.chdir(tasks_path)205 subprocess.call(args.ana,shell=True)206 print "Pressione uma tecla para continuar ou 'q' para sair."207 getch = _Getch()208 if getch.impl() in ('q', 'Q'):209 sys.exit(0)210 else:211 pass212 if not args.task:213 tasks = sorted(glob.glob(subjs_paths+'/PROC''*'))214 if not tasks:215 print ('\nErro -> Não há dados processados em '+subjs+'\n')216 else:217 for tasks_path in tasks:218 print ('\nAbrindo '+tasks_path+' em '+subjs+'...')219 os.chdir(tasks_path)220 subprocess.call(args.rvw, shell=True)221 print "Pressione uma tecla para continuar ou 'q' para sair."222 getch = _Getch()223 if getch.impl() in ('q', 'Q'):224 sys.exit(0)225 else:226 pass227 else:228 for task in args.task:229 tasks = sorted(glob.glob(subjs_paths+'/PROC.'+task+'*'))230 if not tasks:231 print ('\nErro -> Não existe '+task+ ' em '+subjs+'\n')232 exit(-1)233 for task in args.task:234 tasks = sorted(glob.glob(subjs_paths+'/PROC.'+task+'*'))235 for tasks_path in tasks:236 print ('\nAbrindo '+task+' em '+subjs+'...')237 os.chdir(tasks_path)238 subprocess.call(args.rvw, shell=True)239 print "Pressione uma tecla para continuar ou 'q' para sair."240 getch = _Getch()241 if getch.impl() in ('q', 'Q'):242 sys.exit(0)243 else:244 pass245 else:246 caminho2 = glob.glob('/media/DATA/'+args.proj+'/'+sigla+'*'+subjs+'/visit%d' % +args.vis)247 subjs_paths = ''.join(caminho2)248 if not os.path.isdir(subjs_paths):249 print '\nErro -> '+sigla+'*'+subjs+' não possui o diretório visit especificado.'250 print 'OBS: Se não há diretório visit para '+sigla+'*'+subjs+', considere usar -v 0.\n'251 exit(-1)252 else:253##############################################################################################################254 if args.ana:255 for task in args.task:256 tasks = sorted(glob.glob(subjs_paths+'/PROC.'+task+'*'))257 if not tasks:258 print ('\nErro -> Não existe '+task+ ' em '+subjs+'\n')259 exit(-1)260 for task in args.task:261 tasks = sorted(glob.glob(subj_path+'/PROC.'+task+'*'))262 for tasks_path in tasks:263 print ('\nAbrindo '+task+' em '+subjs+'...')264 os.chdir(tasks_path)265 subprocess.call(args.ana,shell=True)266 print "Pressione uma tecla para continuar ou 'q' para sair."267 getch = _Getch()268 if getch.impl() in ('q', 'Q'):269 sys.exit(0)270 else:271 pass272############################################################################################################## 273 if not args.task:274 tasks = sorted(glob.glob(subjs_paths+'/PROC''*'))275 if not tasks:276 print ('\nErro -> Não há dados processados em '+subjs+'\n')277 else:278 for tasks_path in tasks:279 print ('\nAbrindo '+tasks_path+' em '+subjs+'...')280 os.chdir(tasks_path)281 subprocess.call(args.rvw, shell=True)282 print "Pressione uma tecla para continuar ou 'q' para sair."283 getch = _Getch()284 if getch.impl() in ('q', 'Q'):285 sys.exit(0)286 else:287 pass288 else:289 for task in args.task:290 tasks = sorted(glob.glob(subjs_paths+'/PROC.'+task+'*'))291 if not tasks:292 print ('\nErro -> Não existe '+task+ ' em '+subjs+'\n')293 exit(-1)294 for task in args.task:295 tasks = sorted(glob.glob(subjs_paths+'/PROC.'+task+'*'))296 for tasks_path in tasks:297 print ('\nAbrindo '+task+' em '+subjs+'...')298 os.chdir(tasks_path)299 subprocess.call(args.rvw, shell=True)300 print "Pressione uma tecla para continuar ou 'q' para sair."301 getch = _Getch()302 if getch.impl() in ('q', 'Q'):303 sys.exit(0)304 else:...
inat.py
Source:inat.py
1# Copyright 2017-2020 Amazon.com, Inc. or its affiliates. All Rights Reserved.2#3# Licensed under the Apache License, Version 2.0 (the "License"). You4# may not use this file except in compliance with the License. A copy of5# the License is located at6#7# http://aws.amazon.com/apache2.0/8#9# or in the "license" file accompanying this file. This file is10# distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF11# ANY KIND, either express or implied. See the License for the specific12# language governing permissions and limitations under the License.13import os14from collections import defaultdict15import json16from .dataset import ClassificationTaskDataset17class iNat2018Dataset(ClassificationTaskDataset):18 """iNaturalist 2018 Dataset19 Parameters20 ----------21 path : str (default None)22 path to dataset23 if None, search using DATA environment variable24 split : str (train|test)25 load provided split26 task_id : int (default 0)27 id of task28 level : str (default 'order')29 what level of taxonomy to create tasks30 metadata : dict (default empty)31 extra arbitrary metadata32 transform : callable (default None)33 Optional transform to be applied on a sample.34 target_transform : callable (default None)35 Optional transform to be applied on a label.36 """37 CATEGORIES_FILE = 'categories.json'38 TASKS_FILE = 'tasks.json'39 CLASS_TASKS_FILE = 'classes_tasks.json'40 TRAIN_2018_FILE = 'train2018.json'41 ORDER = 'order'42 CLASS = 'class'43 POSSIBLE_LEVELS = [ORDER, CLASS]44 TRAIN_SPLIT = 'train'45 VAL_SPLIT = 'val'46 POSSIBLE_SPLITS = [TRAIN_SPLIT, VAL_SPLIT]47 def __init__(self, root, split=TRAIN_SPLIT, task_id=0, level=ORDER,48 metadata={}, transform=None, target_transform=None):49 assert isinstance(root, str)50 path = os.path.join(root, 'inat2018')51 assert os.path.exists(path), path52 assert split in iNat2018Dataset.POSSIBLE_SPLITS, split53 assert isinstance(task_id, int)54 assert level in iNat2018Dataset.POSSIBLE_LEVELS, level55 self.split = split56 # load categories57 with open(os.path.join(path, iNat2018Dataset.CATEGORIES_FILE)) as f:58 self.categories = json.load(f)59 # load or create set of tasks (corresponding to classification inside orders)60 tasks_path = os.path.join(path, iNat2018Dataset.TASKS_FILE) if level == 'order' else os.path.join(path,61 iNat2018Dataset.CLASS_TASKS_FILE)62 if not os.path.exists(tasks_path):63 self._create_tasks(tasks_path, path, level=level)64 with open(tasks_path) as f:65 self.tasks = json.load(f)66 annotation_file = os.path.join(path, "{}2018.json".format(split))67 assert os.path.exists(annotation_file), annotation_file68 with open(annotation_file) as f:69 j = json.load(f)70 annotations = j['annotations']71 images_list = [img['file_name'] for img in j['images']]72 # get labels73 task = self.tasks[task_id]74 species_ids = task['species_ids']75 species_ids = {k: i for i, k in enumerate(species_ids)}76 labels_list = [species_ids.get(a['category_id'], -1) for a in annotations]77 # throw away images we are not training on (identified by label==-1)78 images_list = [img for i, img in enumerate(images_list) if labels_list[i] != -1]79 labels_list = [l for l in labels_list if l != -1]80 # get label names81 label_names = {task['label_map'][str(l)]: n for l, n in zip(task['species_ids'], task['species_names'])}82 task_name = self.tasks[task_id]['name']83 super(iNat2018Dataset, self).__init__(images_list,84 labels_list,85 label_names=label_names,86 root=path,87 task_id=task_id,88 task_name=task_name,89 metadata=metadata,90 transform=transform,91 target_transform=target_transform)92 def _create_tasks(self, tasks_path, root, level=ORDER):93 """Create tasks file.94 Post-conditions:95 Creates a file96 Parameters97 ----------98 tasks_path : str99 path to tasks file to write100 root : str101 root folder to train file102 level : str (default 'order')103 what level of taxonomy to create tasks104 """105 assert level in iNat2018Dataset.POSSIBLE_LEVELS, level106 with open(os.path.join(root, iNat2018Dataset.TRAIN_2018_FILE)) as f:107 annotations = json.load(f)108 annotations = annotations['annotations']109 level_samples = defaultdict(list)110 for r in annotations:111 level_samples[self.categories[r['category_id']][level]].append(r['image_id'])112 tasks = []113 for i, (level_name, _) in enumerate(sorted(level_samples.items(), key=lambda x: len(x[1]), reverse=True)):114 species_in_level = sorted([(c['name'], c['id']) for c in self.categories if c[level] == level_name],115 key=lambda x: x[0])116 species_ids = {k: i for i, (_, k) in enumerate(species_in_level)}117 tasks.append({118 'id': i,119 'name': level_name,120 'species_names': [n for (n, i) in species_in_level],121 'species_ids': [i for (n, i) in species_in_level],122 'label_map': species_ids123 })124 with open(tasks_path, 'w') as f:...
cli.py
Source:cli.py
1import click2from linum import SvgRenderer3from linum.excel_renderer.excel_renderer import ExcelRenderer4from linum.txt_renderer.console_renderer import ConsoleRenderer5from linum.txt_renderer.txt_renderer import TxtRenderer6@click.command()7@click.argument('tasks_path', type=click.Path(exists=True))8@click.option('-o', '--out', type=click.Path(writable=True),9 help='Output file. If not specified then linum creates new file in current directory.')10@click.option('-r', '--renderer', default='CONSOLE', type=click.Choice(['CONSOLE', 'TXT', 'XLSX', 'SVG'], ),11 help="Renderer to use. "12 "'CONSOLE' - for console printing. "13 "'TXT' - for rendering txt file. "14 "'XLSX' - for rendering xlsx file. "15 "'SVG' - for rendering svg file. "16 "Default is 'CONSOLE'.")17@click.option('-c', '--context', type=click.Path(exists=True),18 help="Context for renderer. It is YAML file with render settings. "19 "If not specified then default settings will be applied.")20def cli(tasks_path, out, renderer, context):21 """ Command line interface for linum. """22 if renderer == 'CONSOLE':23 renderer = ConsoleRenderer(tasks_path, context)24 elif renderer == 'TXT':25 renderer = TxtRenderer(tasks_path, context, out)26 elif renderer == 'XLSX':27 renderer = ExcelRenderer(tasks_path, context, out)28 elif renderer == 'SVG':29 renderer = SvgRenderer(tasks_path, context, out)30 renderer.render()31if __name__ == '__main__':...
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