Best Python code snippet using autotest_python
CombineBins.py
Source: CombineBins.py
...53 Y += data.y54 pos += data.pos55 print("[INFO] Data loaded: {}".format(absolute_file_path))56 return Data(x=X, y=Y, pos=pos, total=total)57def pickle_dump(obj, file):58 return pickle.dump(obj, file, protocol=pickle.HIGHEST_PROTOCOL)59def output_data(dst, data):60 print("[INFO] Output: {}".format(os.path.abspath(dst)))61 with open(dst, "wb") as f:62 pickle_dump(data.total, f)63 pickle_dump(data.x, f)64 pickle_dump(data.y, f)65 pickle_dump(data.pos, f)66def main():67 args = process_command()68 data = load_data_from(69 directory_path=args.src,70 need_shuffle_file_paths=args.shuffle_data71 )72 output_data(73 dst=os.path.join(args.dst, args.bin_name),74 data=data75 )76if __name__ == "__main__":...
Tensor2Bin.py
Source: Tensor2Bin.py
...3import pickle4from argparse import ArgumentParser5import clair.utils as utils6logging.basicConfig(format='%(message)s', level=logging.INFO)7def pickle_dump(obj, file):8 return pickle.dump(obj, file, protocol=pickle.HIGHEST_PROTOCOL)9def Run(args):10 utils.setup_environment()11 logging.info("Loading the dataset ...")12 total, XArrayCompressed, YArrayCompressed, posArrayCompressed = \13 utils.get_training_array(14 tensor_fn=args.tensor_fn,15 var_fn=args.var_fn,16 bed_fn=args.bed_fn,17 shuffle=args.shuffle,18 is_allow_duplicate_chr_pos=args.allow_duplicate_chr_pos19 )20 logging.info("Writing to binary ...")21 with open(args.bin_fn, 'wb') as fh:22 pickle_dump(total, fh)23 pickle_dump(XArrayCompressed, fh)24 pickle_dump(YArrayCompressed, fh)25 pickle_dump(posArrayCompressed, fh)26def main():27 parser = ArgumentParser(description="Generate a binary format input tensor")28 parser.add_argument('--tensor_fn', type=str, default="vartensors",29 help="Tensor input")30 parser.add_argument('--var_fn', type=str, default="truthvars",31 help="Truth variants list input")32 parser.add_argument('--bed_fn', type=str, default=None,33 help="High confident genome regions input in the BED format")34 parser.add_argument('--bin_fn', type=str, default=None,35 help="Output a binary tensor file")36 parser.add_argument('--shuffle', action='store_true',37 help="Shuffle on building bin")38 parser.add_argument('--allow_duplicate_chr_pos', action='store_true',39 help="Allow duplicate chromosome:position in tensor input")...
pickle_layer6.py
Source:pickle_layer6.py
1def pickle_layer6(dude_im_so_done_with_this):2 import pickle3 print("pickel encrypting")4 string_list = list(dude_im_so_done_with_this)5 pickle_dump = pickle.dumps(string_list)6 #dude_im_so_done_with_this = ("""import pickle;pickle_dump = {pickle_dump};exec(''.join(pickle.loads(pickle_dump)))""").format(pickle_dump=pickle_dump)7 dude_im_so_done_with_this = ("""import pickle;exec(''.join(pickle.loads({pickle_dump})))""").format(pickle_dump=pickle_dump)...
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