Best Python code snippet using autotest_python
slurm.py
Source:slurm.py
...154 cluster = get_cluster()155 submitcmd = "sbatch"156 if cluster == "CADES":157 submitcmd += " -A birthright" 158 if not is_valid_partition(partition, cluster):159 raise PartitionException(partition, cluster)160 requestpartition = partition161 if requestpartition == "default":162 requestpartition = get_default_partition(cluster)163 elif requestpartition == "fast":164 requestpartition = get_fast_partition(cluster)165 submitcmd +=" -N {NUMNODES} -c {NUMTASKS} --partition={PARTITION}".format(NUMNODES=numnodes, NUMTASKS=numtasks, PARTITION=requestpartition)166 if jobarray:167 submitcmd += " --array={ARRAYMIN}-{ARRAYMAX}".format(ARRAYMIN=jobarray[0], ARRAYMAX=jobarray[1])168 if dependency > 0:169 submitcmd += " -d {DEP}".format(DEP=dependency)170 submitcmd += " -J {JOBNAME} -o {LOGFILE}".format(JOBNAME=jobname, LOGFILE=logfile)171 runcommand = command172 if cluster == "CADES":173 submitcmd += " --mem=4G --time={MAXTIME}".format(MAXTIME=maxtime)174 # On CADES scripts must run inside a container175 runcommand = "{} {}".format(os.path.join(os.getenv("SUBSTRUCTURE_ROOT"), "cadescontainerwrapper.sh"), command)176 submitcmd += " {COMMAND}".format(COMMAND=runcommand)177 logging.debug("Submitcmd: {}".format(submitcmd))178 submitResult = subprocess.run(submitcmd, shell=True, stdout=subprocess.PIPE)179 sout = submitResult.stdout.decode("utf-8")180 toks = sout.split(" ")181 jobid = int(toks[len(toks)-1])182 return jobid183def submit_dependencies(command: str, jobname: str, logfile: str, partition: str = "short", numnodes: int = 1, numtasks: int = 1, jobarray = None, dependency: list = [], dependency_mode: str = "afterany", maxtime: str ="8:00:00") -> int:184 cluster = get_cluster()185 submitcmd = "sbatch"186 if cluster == "CADES":187 submitcmd += " -A birthright" 188 if not is_valid_partition(partition, cluster):189 raise PartitionException(partition, cluster)190 requestpartition = partition191 if requestpartition == "default":192 requestpartition = get_default_partition(cluster)193 elif requestpartition == "fast":194 requestpartition = get_fast_partition(cluster)195 submitcmd +=" -N {NUMNODES} -c {NUMTASKS} --partition={PARTITION}".format(NUMNODES=numnodes, NUMTASKS=numtasks, PARTITION=requestpartition)196 if jobarray:197 submitcmd += " --array={ARRAYMIN}-{ARRAYMAX}".format(ARRAYMIN=jobarray[0], ARRAYMAX=jobarray[1])198 if len(dependency):199 dependencystring = dependency_mode200 for dep in dependency:201 dependencystring += ":{}".format(dep)202 submitcmd += " --dependency={DEP}".format(DEP=dependencystring)...
test_isomorphism.py
Source:test_isomorphism.py
...53 are_isomorphic, S = are_fractionally_isomorphic(G, H, algorithm=algorithm)54 assert are_isomorphic55 if algorithm == 'cep':56 partition1, partition2 = S57 assert is_valid_partition(G, partition1)58 assert is_valid_partition(H, partition2)59 assert is_partition_equitable(G, partition1)60 assert is_partition_equitable(H, partition2)61 assert are_common_partitions(G, partition1, H, partition2)62 else:63 assert verify_isomorphism(G, H, S)64def test_are_fractionally_isomorphic():65 # Test some graphs that are fractionally isomorphic but not isomorphic.66 _assert_fractionally_isomorphic()67 # Test some graphs that are isomorphic, and therefore fractionally68 # isomorphic as well.69 G = graph_from_file('data/graph3.txt')70 H = graph_from_file('data/graph4.txt')71 _assert_fractionally_isomorphic(G, H)72 # Test for graphs that are not fractionally isomorphic....
mcdownloader.py
Source:mcdownloader.py
...25 logging.error("%s", e)26 except AliTrainDB.TrainNotFoundException as e:27 logging.error("%s", e)28 def set_partition_for_download(self, partition: str):29 if not is_valid_partition(self._cluster, partition):30 raise PartitionException(partition, self._cluster)31 self._partitionDownload = partition32 def set_maxtime(self, maxtime: str):33 self._maxtime = maxtime34 def set_token(self, cert: str, key: str):35 self._tokens["cert"] = cert36 self._tokens["key"] = key37 def submit_sample(self, sample: str):38 if not self._trainrun:39 logging.error("Failed initializing train run")40 return41 jobid_download = self.submit_download(sample)42 if not jobid_download:43 return...
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