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How to use call_list method in autotest
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transformer_scaffold_test.py
Source:transformer_scaffold_test.py 
1# Copyright 2019 The TensorFlow Authors. All Rights Reserved.2#3# Licensed under the Apache License, Version 2.0 (the "License");4# you may not use this file except in compliance with the License.5# You may obtain a copy of the License at6#7# http://www.apache.org/licenses/LICENSE-2.08#9# Unless required by applicable law or agreed to in writing, software10# distributed under the License is distributed on an "AS IS" BASIS,11# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.12# See the License for the specific language governing permissions and13# limitations under the License.14# ==============================================================================15"""Tests for Keras-based transformer block layer."""16from __future__ import absolute_import17from __future__ import division18from __future__ import print_function19import json20import numpy as np21import tensorflow as tf22from tensorflow.python.keras import keras_parameterized # pylint: disable=g-direct-tensorflow-import23from official.nlp.modeling.layers import attention24from official.nlp.modeling.layers import transformer_scaffold25# Test class that wraps a standard attention layer. If this layer is called26# at any point, the list passed to the config object will be filled with a27# boolean 'True'. We register this class as a Keras serializable so we can28# test serialization below.29# @tf.keras.utils.register_keras_serializable(package='TestOnly')30class ValidatedAttentionLayer(attention.Attention):31 def __init__(self, call_list, **kwargs):32 super(ValidatedAttentionLayer, self).__init__(**kwargs)33 self.list = call_list34 def call(self, inputs):35 self.list.append(True)36 return super(ValidatedAttentionLayer, self).call(inputs)37 def get_config(self):38 config = super(ValidatedAttentionLayer, self).get_config()39 config['call_list'] = []40 return config41# This decorator runs the test in V1, V2-Eager, and V2-Functional mode. It42# guarantees forward compatibility of this code for the V2 switchover.43@keras_parameterized.run_all_keras_modes44class TransformerLayerTest(keras_parameterized.TestCase):45 def test_layer_creation(self):46 sequence_length = 2147 width = 8048 call_list = []49 attention_layer_cfg = {50 'num_heads': 10,51 'head_size': 8,52 'call_list': call_list,53 }54 test_layer = transformer_scaffold.TransformerScaffold(55 attention_cls=ValidatedAttentionLayer,56 attention_cfg=attention_layer_cfg,57 num_attention_heads=10,58 intermediate_size=2048,59 intermediate_activation='relu')60 # Create a 3-dimensional input (the first dimension is implicit).61 data_tensor = tf.keras.Input(shape=(sequence_length, width))62 output_tensor = test_layer(data_tensor)63 # The default output of a transformer layer should be the same as the input.64 self.assertEqual(data_tensor.shape.as_list(), output_tensor.shape.as_list())65 # If call_list[0] exists and is True, the passed layer class was66 # instantiated from the given config properly.67 self.assertNotEmpty(call_list)68 self.assertTrue(call_list[0], "The passed layer class wasn't instantiated.")69 def test_layer_creation_with_mask(self):70 sequence_length = 2171 width = 8072 call_list = []73 attention_layer_cfg = {74 'num_heads': 10,75 'head_size': 8,76 'call_list': call_list,77 }78 test_layer = transformer_scaffold.TransformerScaffold(79 attention_cls=ValidatedAttentionLayer,80 attention_cfg=attention_layer_cfg,81 num_attention_heads=10,82 intermediate_size=2048,83 intermediate_activation='relu')84 # Create a 3-dimensional input (the first dimension is implicit).85 data_tensor = tf.keras.Input(shape=(sequence_length, width))86 # Create a 2-dimensional input (the first dimension is implicit).87 mask_tensor = tf.keras.Input(shape=(sequence_length, sequence_length))88 output_tensor = test_layer([data_tensor, mask_tensor])89 # The default output of a transformer layer should be the same as the input.90 self.assertEqual(data_tensor.shape.as_list(), output_tensor.shape.as_list())91 # If call_list[0] exists and is True, the passed layer class was92 # instantiated from the given config properly.93 self.assertNotEmpty(call_list)94 self.assertTrue(call_list[0], "The passed layer class wasn't instantiated.")95 def test_layer_creation_with_incorrect_mask_fails(self):96 sequence_length = 2197 width = 8098 call_list = []99 attention_layer_cfg = {100 'num_heads': 10,101 'head_size': 8,102 'call_list': call_list,103 }104 test_layer = transformer_scaffold.TransformerScaffold(105 attention_cls=ValidatedAttentionLayer,106 attention_cfg=attention_layer_cfg,107 num_attention_heads=10,108 intermediate_size=2048,109 intermediate_activation='relu')110 # Create a 3-dimensional input (the first dimension is implicit).111 data_tensor = tf.keras.Input(shape=(sequence_length, width))112 # Create a 2-dimensional input (the first dimension is implicit).113 mask_tensor = tf.keras.Input(shape=(sequence_length, sequence_length - 3))114 with self.assertRaisesRegex(ValueError, 'When passing a mask tensor.*'):115 _ = test_layer([data_tensor, mask_tensor])116 def test_layer_invocation(self):117 sequence_length = 21118 width = 80119 call_list = []120 attention_layer_cfg = {121 'num_heads': 10,122 'head_size': 8,123 'call_list': call_list,124 }125 test_layer = transformer_scaffold.TransformerScaffold(126 attention_cls=ValidatedAttentionLayer,127 attention_cfg=attention_layer_cfg,128 num_attention_heads=10,129 intermediate_size=2048,130 intermediate_activation='relu')131 # Create a 3-dimensional input (the first dimension is implicit).132 data_tensor = tf.keras.Input(shape=(sequence_length, width))133 output_tensor = test_layer(data_tensor)134 # Create a model from the test layer.135 model = tf.keras.Model(data_tensor, output_tensor)136 # Invoke the model on test data. We can't validate the output data itself137 # (the NN is too complex) but this will rule out structural runtime errors.138 batch_size = 6139 input_data = 10 * np.random.random_sample(140 (batch_size, sequence_length, width))141 _ = model.predict(input_data)142 # If call_list[0] exists and is True, the passed layer class was143 # instantiated from the given config properly.144 self.assertNotEmpty(call_list)145 self.assertTrue(call_list[0], "The passed layer class wasn't instantiated.")146 def test_layer_invocation_with_mask(self):147 sequence_length = 21148 width = 80149 call_list = []150 attention_layer_cfg = {151 'num_heads': 10,152 'head_size': 8,153 'call_list': call_list,154 }155 test_layer = transformer_scaffold.TransformerScaffold(156 attention_cls=ValidatedAttentionLayer,157 attention_cfg=attention_layer_cfg,158 num_attention_heads=10,159 intermediate_size=2048,160 intermediate_activation='relu')161 # Create a 3-dimensional input (the first dimension is implicit).162 data_tensor = tf.keras.Input(shape=(sequence_length, width))163 # Create a 2-dimensional input (the first dimension is implicit).164 mask_tensor = tf.keras.Input(shape=(sequence_length, sequence_length))165 output_tensor = test_layer([data_tensor, mask_tensor])166 # Create a model from the test layer.167 model = tf.keras.Model([data_tensor, mask_tensor], output_tensor)168 # Invoke the model on test data. We can't validate the output data itself169 # (the NN is too complex) but this will rule out structural runtime errors.170 batch_size = 6171 input_data = 10 * np.random.random_sample(172 (batch_size, sequence_length, width))173 # The attention mask should be of shape (batch, from_seq_len, to_seq_len),174 # which here is (batch, sequence_length, sequence_length)175 mask_data = np.random.randint(176 2, size=(batch_size, sequence_length, sequence_length))177 _ = model.predict([input_data, mask_data])178 # If call_list[0] exists and is True, the passed layer class was179 # instantiated from the given config properly.180 self.assertNotEmpty(call_list)181 self.assertTrue(call_list[0], "The passed layer class wasn't instantiated.")182 def test_layer_invocation_with_float16_dtype(self):183 sequence_length = 21184 width = 80185 call_list = []186 attention_layer_cfg = {187 'num_heads': 10,188 'head_size': 8,189 'call_list': call_list,190 }191 test_layer = transformer_scaffold.TransformerScaffold(192 attention_cls=ValidatedAttentionLayer,193 attention_cfg=attention_layer_cfg,194 num_attention_heads=10,195 intermediate_size=2048,196 intermediate_activation='relu',197 dtype='float16')198 # Create a 3-dimensional input (the first dimension is implicit).199 data_tensor = tf.keras.Input(200 shape=(sequence_length, width), dtype=tf.float16)201 # Create a 2-dimensional input (the first dimension is implicit).202 mask_tensor = tf.keras.Input(shape=(sequence_length, sequence_length))203 output_tensor = test_layer([data_tensor, mask_tensor])204 # Create a model from the test layer.205 model = tf.keras.Model([data_tensor, mask_tensor], output_tensor)206 # Invoke the model on test data. We can't validate the output data itself207 # (the NN is too complex) but this will rule out structural runtime errors.208 batch_size = 6209 input_data = (10 * np.random.random_sample(210 (batch_size, sequence_length, width))).astype(np.float16)211 # The attention mask should be of shape (batch, from_seq_len, to_seq_len),212 # which here is (batch, sequence_length, sequence_length)213 mask_data = np.random.randint(214 2, size=(batch_size, sequence_length, sequence_length))215 _ = model.predict([input_data, mask_data])216 # If call_list[0] exists and is True, the passed layer class was217 # instantiated from the given config properly.218 self.assertNotEmpty(call_list)219 self.assertTrue(call_list[0], "The passed layer class wasn't instantiated.")220 def test_transform_with_initializer(self):221 sequence_length = 21222 width = 80223 call_list = []224 attention_layer_cfg = {225 'num_heads': 10,226 'head_size': 8,227 'call_list': call_list,228 }229 test_layer = transformer_scaffold.TransformerScaffold(230 attention_cls=ValidatedAttentionLayer,231 attention_cfg=attention_layer_cfg,232 num_attention_heads=10,233 intermediate_size=2048,234 intermediate_activation='relu',235 kernel_initializer=tf.keras.initializers.TruncatedNormal(stddev=0.02))236 # Create a 3-dimensional input (the first dimension is implicit).237 data_tensor = tf.keras.Input(shape=(sequence_length, width))238 output = test_layer(data_tensor)239 # The default output of a transformer layer should be the same as the input.240 self.assertEqual(data_tensor.shape.as_list(), output.shape.as_list())241 # If call_list[0] exists and is True, the passed layer class was242 # instantiated from the given config properly.243 self.assertNotEmpty(call_list)244 self.assertTrue(call_list[0])245 def test_layer_restoration_from_config(self):246 sequence_length = 21247 width = 80248 call_list = []249 attention_layer_cfg = {250 'num_heads': 10,251 'head_size': 8,252 'call_list': call_list,253 'name': 'test_layer',254 }255 test_layer = transformer_scaffold.TransformerScaffold(256 attention_cls=ValidatedAttentionLayer,257 attention_cfg=attention_layer_cfg,258 num_attention_heads=10,259 intermediate_size=2048,260 intermediate_activation='relu')261 # Create a 3-dimensional input (the first dimension is implicit).262 data_tensor = tf.keras.Input(shape=(sequence_length, width))263 # Create a 2-dimensional input (the first dimension is implicit).264 mask_tensor = tf.keras.Input(shape=(sequence_length, sequence_length))265 output_tensor = test_layer([data_tensor, mask_tensor])266 # Create a model from the test layer.267 model = tf.keras.Model([data_tensor, mask_tensor], output_tensor)268 # Invoke the model on test data. We can't validate the output data itself269 # (the NN is too complex) but this will rule out structural runtime errors.270 batch_size = 6271 input_data = 10 * np.random.random_sample(272 (batch_size, sequence_length, width))273 # The attention mask should be of shape (batch, from_seq_len, to_seq_len),274 # which here is (batch, sequence_length, sequence_length)275 mask_data = np.random.randint(276 2, size=(batch_size, sequence_length, sequence_length))277 pre_serialization_output = model.predict([input_data, mask_data])278 # Serialize the model config. Pass the serialized data through json to279 # ensure that we can serialize this layer to disk.280 serialized_data = json.dumps(model.get_config())281 post_string_serialized_data = json.loads(serialized_data)282 # Create a new model from the old config, and copy the weights. These models283 # should have identical outputs.284 new_model = tf.keras.Model.from_config(post_string_serialized_data)285 new_model.set_weights(model.get_weights())286 output = new_model.predict([input_data, mask_data])287 self.assertAllClose(pre_serialization_output, output)288 # If the layer was configured correctly, it should have a list attribute289 # (since it should have the custom class and config passed to it).290 new_model.summary()291 new_call_list = new_model.get_layer(292 name='transformer_scaffold')._attention_layer.list293 self.assertNotEmpty(new_call_list)294 self.assertTrue(new_call_list[0],295 "The passed layer class wasn't instantiated.")296if __name__ == '__main__':...
defer_test.py
Source:defer_test.py
1#!/usr/bin/python2.42# Copyright 2009, Google Inc.3# All rights reserved.4#5# Redistribution and use in source and binary forms, with or without6# modification, are permitted provided that the following conditions are7# met:8#9# * Redistributions of source code must retain the above copyright10# notice, this list of conditions and the following disclaimer.11# * Redistributions in binary form must reproduce the above12# copyright notice, this list of conditions and the following disclaimer13# in the documentation and/or other materials provided with the14# distribution.15# * Neither the name of Google Inc. nor the names of its16# contributors may be used to endorse or promote products derived from17# this software without specific prior written permission.18#19# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS20# "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT21# LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR22# A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT23# OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,24# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT25# LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,26# DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY27# THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT28# (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE29# OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.30"""Test for defer. These are SMALL tests."""31import unittest32import SCons.Errors33import TestFramework34#------------------------------------------------------------------------------35class DeferTests(unittest.TestCase):36 """Tests for defer module."""37 def setUp(self):38 """Per-test setup."""39 self.call_list = []40 self.env = self.root_env.Clone()41 def testSimpleDefer(self):42 """Simple defer, passing function pointers."""43 def Sub1(env):44 self.call_list.append(1)45 # Somewhat counter-intuitively, defer does NOT make a copy of the46 # environment, so VAR1 will actually be 'cherry' here. Should we change47 # this?48 self.assertEqual(env['VAR1'], 'cherry')49 def Sub2(env):50 env = env51 self.call_list.append(2)52 def Sub3(env):53 env = env54 self.call_list.append(3)55 env = self.env56 env['VAR1'] = 'apple'57 env.Defer(Sub1)58 env['VAR1'] = 'cherry'59 env.Defer(Sub2, after=Sub1)60 env.Defer(Sub3)61 # Now add relationships between Sub3 and other methods. Note that while62 # after can refer to a function directly or by name, the function we're63 # deferring needs to be referenced by name, since otherwise it'll add64 # another instance that function to the list.65 env.Defer('Sub3', after=Sub1)66 env.Defer('Sub2', after='Sub3')67 # Functions are not called until ExecuteDefer()68 self.assertEqual(self.call_list, [])69 env.ExecuteDefer()70 self.assertEqual(self.call_list, [1, 3, 2])71 # Calling ExecuteDefer() again won't do anything, since the previous call72 # consumed the deferred functions.73 env.ExecuteDefer()74 self.assertEqual(self.call_list, [1, 3, 2])75 def testDeferGroups(self):76 """Test defer groups."""77 def Sub1a(env):78 env = env79 self.call_list.append(1)80 def Sub1b(env):81 env = env82 # Append the same thing as 4a; order within defer groups is not defined.83 self.call_list.append(1)84 def Sub2(env):85 env = env86 self.call_list.append(2)87 def Sub3(env):88 env = env89 self.call_list.append(3)90 def Sub4(env):91 env = env92 self.call_list.append(4)93 def Sub5(env):94 env = env95 self.call_list.append(5)96 def Sub6(env):97 env = env98 self.call_list.append(6)99 env = self.env100 # Note that we can set up the relationships by name before any functions101 # are actually deferred. Also note that each function is implicitly in a102 # group with its function name.103 env.Defer('GroupA', after='Sub4')104 # Can defer after multiple groups/functions, by either name or reference.105 # Note that Sub6 is not actually deferred; just passing it in after, or by106 # name only, doesn't cause it to be called.107 env.Defer('Sub6')108 env.Defer('GroupB', after=['GroupC', Sub5, Sub6])109 env.Defer(Sub1a, 'GroupC', after='GroupA')110 env.Defer(Sub1b, 'GroupC')111 env.Defer(Sub2, 'GroupA')112 env.Defer(Sub3, 'GroupB')113 env.Defer(Sub4)114 env.Defer(Sub5)115 env.ExecuteDefer()116 self.assertEqual(self.call_list, [4, 5, 2, 1, 1, 3])117 def testDeferNotString(self):118 """Test attempts to defer after things that aren't strings or functions."""119 env = self.env120 # Can only defer after strings and functions121 self.assertRaises(ValueError, env.Defer, 'GroupB', after=42)122 def testDeferInheritance(self):123 """Test defer inheritance."""124 def Sub1(env):125 env = env126 self.call_list.append(1)127 def Sub2(env):128 env = env129 self.call_list.append(2)130 def Sub3(env):131 env = env132 self.call_list.append(3)133 env = self.env134 env.Defer(Sub1)135 # Permitted (but not required) to forward-declare defer-after relationships136 env.Defer('GroupA', after=Sub1)137 env_child1 = env.Clone()138 env_child1.Defer('GroupA', Sub2)139 env_child2 = env.Clone()140 env_child2.Defer('GroupA', Sub3)141 env.ExecuteDefer() # Should execute Sub1 but not Sub2142 self.assertEqual(self.call_list, [1])143 self.call_list = []144 env_child1.ExecuteDefer() # Should execute Sub1 (again) and Sub2145 self.assertEqual(self.call_list, [1, 2])146 self.call_list = []147 env_child2.ExecuteDefer() # Should execute Sub1 (again) and Sub3148 self.assertEqual(self.call_list, [1, 3])149 def testDeferRoot(self):150 """Test defer root."""151 # If SetDeferRoot() is used, deferrals are executed by the root's152 # ExecuteDefer(). Deferrals inherited from parent environments are brought153 # down to the new root environment. Subsequent deferrals from children of154 # the root keep their environments as specified by Defer().155 def Sub1(env):156 self.call_list.append(1)157 # Defer from child of root is passed the child environment158 self.assertEqual(env['VAR1'], 'child')159 def Sub2(env):160 self.call_list.append(2)161 # Defer from parent of root is passed the root environment162 self.assertEqual(env['VAR2'], 'defer_root')163 env_parent = self.env.Clone(VAR2='parent')164 env_parent.Defer(Sub2)165 env_defer_root = env_parent.Clone(VAR2='defer_root')166 env_defer_root.SetDeferRoot()167 env_child = env_defer_root.Clone(VAR1='child')168 env_child.Defer(Sub1, after=Sub2)169 # Since child is now the root, calling ExecuteDefer() from one of its170 # children does nothing.171 env_child.ExecuteDefer()172 self.assertEqual(self.call_list, [])173 env_defer_root.ExecuteDefer() # Should run Sub1174 self.assertEqual(self.call_list, [2, 1])175 # Environments above the one calling GetDeferRoot() keep their own roots.176 self.assertEqual(env_parent.GetDeferRoot(), env_parent)177 # Environments at or beneath should see the context for GetDeferRoot().178 self.assertEqual(env_defer_root.GetDeferRoot(), env_defer_root)179 self.assertEqual(env_child.GetDeferRoot(), env_defer_root)180 def testDeferReentrancy(self):181 """Test re-entrant calls to ExecuteDefer()."""182 def Sub1(env):183 env.ExecuteDefer()184 env = self.env185 env.Defer(Sub1)186 self.assertRaises(SCons.Errors.UserError, env.ExecuteDefer)187 def testDeferNested(self):188 """Test nested calls to ExecuteDefer()."""189 def Sub1(env):190 env = env191 self.call_list.append(1)192 def Sub2(env):193 env = env194 self.call_list.append(2)195 env.Defer(Sub1)196 def Sub3(env):197 env = env198 self.call_list.append(3)199 env = self.env200 env.Defer(Sub2)201 env.Defer(Sub3, after=Sub2)202 # Make sure PrintDefer() at least doesn't crash.203 env.PrintDefer()204 env.ExecuteDefer()205 self.assertEqual(self.call_list, [2, 1, 3])206#------------------------------------------------------------------------------207def TestSConstruct(scons_globals):208 """Test SConstruct file.209 Args:210 scons_globals: Global variables dict from the SConscript file.211 """212 # Get globals from SCons213 Environment = scons_globals['Environment']214 env = Environment(tools=['environment_tools', 'defer'])215 # Run unit tests216 TestFramework.RunUnitTests(DeferTests, root_env=env)217def main():218 test = TestFramework.TestFramework()219 test.subdir('defer')220 base = 'defer/'221 test.WriteSConscript(base + 'SConstruct', TestSConstruct)222 test.run(chdir=base, stderr=None)223 test.pass_test()224if __name__ == '__main__':...
update_call_list.py
Source:update_call_list.py
1from django.db.models import get_model2from config.celery import app3from edc.constants import NEW, CLOSED, OPEN4@app.task5def update_call_list(label, verbose=True):6 """Adds information from SubjectConsent instances from the specified survey to the7 CallList model for the current survey.8 If there is no SubjectLocator or subject_locator.may_follow='No', the subject is not added9 to the call list.10 If needed, the household member for the next survey will be created.11 See (HouseholdStructure manager method add_household_members_from_survey).12 """13 CallList = get_model('mpepu_maternal', 'CallList')14 MaternalConsent = get_model('mpepu_maternal', 'MaternalConsent')15 MaternalLocator = get_model('mpepu_maternal', 'MaternalLocator')16 options = {}17 n = 018 total = MaternalConsent.objects.all().count()19 print 'Pulled {} consents.'.format(total)...
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