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How to use apply_selector method in autotest

Best Python code snippet using autotest_python

helpers.py

Source:helpers.py

...23        return self.nfl.shield.query(op)24    @staticmethod25    def _standard_fields(obj: shield.AbstractEntity, type_):26        obj.__fields__(*DEFAULT_FIELDS.get(type_))27def apply_selector(obj, type_, select_fun: Callable[[types.Type], None] = None):28    if select_fun:29        select_fun(obj)30    else:31        Helper._standard_fields(obj, type_)32class ScheduleHelper(Helper):33    def current_week(self, date: datetime.datetime = None) -> shield.Week:34        op = Operation(shield.Viewer)35        if date is None:36            week: shield.Week = op.viewer.league.current.week()37        else:38            date = date.astimezone(pendulum.UTC)39            week: shield.Week = op.viewer.league.current(date=date).week()40        week.season_value()41        week.season_type()42        week.week_order()43        week.week_type()44        week.week_value()45        return self.query(op).viewer.league.current.week46    def week(self, date: datetime.datetime):47        return self.current_week(date)48class GameHelper(Helper):49    def week_games(self, week=None, season_type=None, season=None):50        if week is None or season_type is None or season is None:51            current_week = self.nfl.schedule.current_week()52        week = week if week is not None else current_week.week_value53        season_type = season_type or current_week.season_type54        season = season or current_week.season_value55        games = self.nfl.football.games_by_week(season, season_type=season_type, week=week)56        return games57    def by_id(self, game_id: str):58        return self.nfl.football.game_by_id(game_id)59    def game_detail_id_for_id(self, game_id: str):60        return self.nfl.football.game_detail_id_for_id(game_id)61class GameDetailHelper(Helper):62    def by_id(self, id, select_fun: Callable[[shield.GameDetail], None] = None):63        op = Operation(shield.Viewer)64        game_detail = op.viewer.game_detail(id=id)65        apply_selector(game_detail, shield.GameDetail, select_fun)66        game_detail = self.query(op).viewer.game_detail67        return game_detail68    def by_ids(self, ids, select_fun: Callable[[shield.GameDetail], None] = None):69        op = Operation(shield.Viewer)70        game_details = op.viewer.game_details_by_ids(ids=ids)71        apply_selector(game_details, shield.GameDetail, select_fun)72        return self.query(op).viewer.game_details_by_ids73class StandingsHelper(Helper):74    def get(self, week, season_type, season):75        result = self.nfl.football.standings_by_week(season, season_type, week)76        team_records = result.weeks[0].standings77        teams = {t.id: t for t in self.nfl.team.by_season(season)}78        return [(teams[team_record.team.id], team_record) for team_record in team_records]79    def current(self, date=None):80        current_week = self.nfl.schedule.current_week(date)81        week = current_week.week_value82        season_type = current_week.season_type83        season = current_week.season_value84        return self.get(week, season_type, season)85class TeamHelper(Helper):86    def get_all(self, season_value=0, select_fun: Callable[[shield.Team], None] = None) -> List[shield.Team]:87        op = Operation(shield.Viewer)88        teams = op.viewer.teams(first=100, season_value=season_value)89        team = teams.edges.node()90        apply_selector(team, shield.Team, select_fun)91        teams = self.query(op)92        return [t.node for t in teams.viewer.teams.edges]93    def lookup(self, abbreviation, season_value=0, select_fun: Callable[[shield.Team], None] = None):94        # There is no way to lookup teams by anything other than id95        # So we just get them all and pick it from the bunch :|96        def add_abbreviation(team):97            if select_fun:98                select_fun(team)99            team.abbreviation()100        all_teams = self.get_all(season_value, select_fun=add_abbreviation)101        return next(filter(lambda t: t.abbreviation == abbreviation, all_teams), None)102    def by_ids(self, ids: List[str], select_fun: Callable[[shield.Game], None] = None):103        op = Operation(shield.Viewer)104        teams = op.viewer.teams_by_ids(ids=ids)105        apply_selector(teams, shield.Team, select_fun)106        teams = self.query(op)107        return teams.viewer.teams_by_ids108    def by_season(self, season: int):109        return self.nfl.football.teams_by_season(season).teams110class RosterHelper(Helper):111    def lookup(self, abbreviation, select_fun: Callable[[shield.CurrentClubRoster], None] = None):112        def add_abbr_and_property_id(team):113            if select_fun:114                select_fun(team)115            team.abbreviation()116            team.franchise.property.id()117        all_teams = self.nfl.team.get_all(select_fun=add_abbr_and_property_id)118        the_team = next(filter(lambda t: t.abbreviation == abbreviation, all_teams), None)119        if not the_team:120            return None121        return self.by_id(the_team.franchise.property.id, select_fun)122    def by_id(self, id: str, select_fun: Callable[[shield.CurrentClubRoster], None] = None):123        # id param is team.franchise.property.id124        op = Operation(shield.Viewer)125        roster = op.viewer.clubs.current_club_roster(property_id=id)126        apply_selector(roster, shield.CurrentClubRoster, select_fun)127        roster = self.query(op)128        return roster.viewer.clubs.current_club_roster129    def by_team_id(self, team_id: str, select_fun: Callable[[shield.CurrentClubRoster], None] = None):130        def add_property_id(team):131            if select_fun:132                select_fun(team)133            team.franchise.property.id()134        the_team = self.nfl.team.by_ids(ids=[team_id], select_fun=add_property_id)135        if not len(the_team):136            return None137        else:138            the_team = the_team[0]139        return self.by_id(the_team.franchise.property.id, select_fun)140class CombineHelper(Helper):141    def participants(self, year: int = 0):142        return self.nfl.football.combine_profiles_by_year(year)143class PlayerHelper(Helper):144    def lookup(self, season: int = 0, player_name: str = None, team_id: str = None, status=None, first=100, after=None, select_fun: Callable[[shield.Player], None] = None):145        def add_team_person_fields(player):146            if select_fun:147                select_fun(player)148            else:149                apply_selector(player, shield.Player)150                person = player.person()151                apply_selector(person, shield.PlayerPerson)152                team = player.current_team()153                apply_selector(team, shield.Team)154        op = Operation(shield.Viewer)155        players = op.viewer.players(season_season=season, person_display_name_contains=player_name, current_team_id=team_id, first=first, after=after)156        players.edges.cursor()157        player = players.edges.node()158        apply_selector(player, shield.Player, select_fun=add_team_person_fields)159        players = self.query(op)160        player_list = []161        for p in players.viewer.players.edges:162            p.node.cursor = p.cursor163            player_list.append(p.node)164        return player_list165    def by_id(self, id: str, select_fun: Callable[[shield.Player], None] = None):166        def add_team_person_fields(player):167            if select_fun:168                select_fun(player)169            else:170                apply_selector(player, shield.Player)171                person = player.person()172                apply_selector(person, shield.PlayerPerson)173                team = player.current_team()174                apply_selector(team, shield.Team)175        op = Operation(shield.Viewer)176        player = op.viewer.player(id=id)177        apply_selector(player, shield.Player, select_fun=add_team_person_fields)178        player = self.query(op)179        return player.viewer.player180__all__ = [181    'ScheduleHelper',182    'GameHelper',183    'StandingsHelper',184    'TeamHelper',185    'GameDetailHelper',186    'RosterHelper',187    'PlayerHelper',188    'CombineHelper',...

identify_contigs.py

Source:identify_contigs.py

...71    other_align_columns = [c for c in table.columns if c.startswith('num_aln') and c not in chry_align_columns]72    select_y = table[chry_align_columns].sum(axis=1) > 073    no_other = table[other_align_columns].sum(axis=1) < 174    selector = select_y & no_other75    select, remain = apply_selector(selector, table, reason)76    return select, remain77def rule_select_y_specific_motif_hits(table, motif, reason):78    chry_align_columns = [c for c in table.columns if c.startswith('num_aln_chrY')]79    motif_hit_column = f'num_hits_hiq_{motif}'80    select_y = table[chry_align_columns].sum(axis=1) > 081    motif_hit = table[motif_hit_column] > 082    selector = select_y & motif_hit83    select, remain = apply_selector(selector, table, reason)84    return select, remain85def rule_select_many_unspecific_motif_hits(table, motif, reason):86    chry_primary_column = 'num_aln_chrY_PRI'87    motif_hit_column = f'num_hits_hiq_{motif}'88    select_y = table[chry_primary_column] > 089    motif_hit = table[motif_hit_column] > UNSPECIFIC_THRESHOLD90    selector = select_y & motif_hit91    select, remain = apply_selector(selector, table, reason)92    return select, remain93def rule_select_unaligned_specific_hits(table, motif, reason):94    align_columns = [c for c in table.columns if c.startswith('num_aln_')]95    motif_hit_column = f'num_hits_hiq_{motif}'96    select_y = table[align_columns].sum(axis=1) < 197    motif_hit = table[motif_hit_column] > 098    selector = select_y & motif_hit99    select, remain = apply_selector(selector, table, reason)100    return select, remain101def rule_select_majority_primary_alignment(table, reason, chrom):102    chrom_primary_column = f'pct_aln_{chrom}_PRI'103    selector = table[chrom_primary_column] > PRIMARY_ALN_THRESHOLD_PCT104    select, remain = apply_selector(selector, table, reason)105    return select, remain106def apply_selector(selector, table, reason):107    if not selector.any():108        selected_contigs = None109        remaining_contigs = table110    else:111        selected_contigs = table.loc[selector, :].copy()112        remaining_contigs = table.loc[~selector, :].copy()113        selected_contigs['reason'] = reason114    return selected_contigs, remaining_contigs115def merge_aggregated_tables(align, motifs, chrom):116    keep_motif_columns = [117        'target',  # tig name118        'num_hits_hiq'119    ]120    df = pd.read_csv(align, sep='\t', header=0)...

generalise.py

Source:generalise.py

2# find coverage loss examples3# take html file paths as input4# for each file, apply selector and report coverage5import sys6def apply_selector(contents, pattern):7	return Selector(text=contents).css(pattern).extract()8matched = 09total = 010from statread import replace_extension, statuses11selector = sys.argv[1]12for fn in sys.stdin:13	fn = fn.rstrip()14	fn = fn.strip('"')15	with file(fn) as f:16		stat_fn = replace_extension(fn, 'stat')17		stats = list(statuses(file(stat_fn).readlines()))18		contents = f.read()19		result = apply_selector(contents, selector)20		print stats[-1].url21		print result22		print23		if result:24			matched += 125		total += 1...

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