Best Python code snippet using autotest_python
__init__.py
Source:__init__.py
...35 subcommand = CommandLineVerb(verb)36 self.verbs.append(subcommand)37 self._tokens[verb] = subcommand38 return subcommand39 def add_global_option(self, name, *args, **kwargs):40 option = CommandLineOption(name, *args, **kwargs)41 for arg in option.all_names:42 if arg in self._tokens:43 raise DuplicateArgumentError(arg, 'global')44 self._tokens[arg] = option45 self.global_opts.append(option)46 @property47 def help(self):48 if self._help is None:49 self._help = self.add_verb('help')50 return self._help51 def default_namespace(self):52 namespace = Namespace()53 for opt in self.global_opts:...
readwrite.py
Source:readwrite.py
...30 self.compress_output = True31 self.args = None32 @staticmethod33 def add_options_to_parser(parser):34 parser.add_global_option('--input', '-i', destvar='input')35 parser.add_global_option('--output', '-o', destvar='output')36 parser.add_global_option('--input-format', destvar='input_format',37 choices=['h5ad', '10x', 'loom', 'mtx', 'mex', 'bustools-count'],38 default='h5ad')39 parser.add_global_option('--no-write', destvar='write', action='store_false')40 parser.add_global_option('--no-compress', destvar='compress', action='store_false')41 def process_arguments(self, args):42 self.args = args43 self.input_filename = args.input44 self.input_format = args.input_format45 self.write_output = args.write46 if self.write_output:47 self.output_filename = args.output48 self.compress_output = args.compress49 def load_data(self):50 logging.info(f'Loading {self.input_filename} ({self.input_format} format)')51 data = self._load()52 if self.input_format != 'h5ad':53 description = (f'Imported {self.input_format} data from {os.path.abspath(self.input_filename)}'54 f' ({data.n_obs} cells x {data.n_vars} genes)')...
scuttle.py
Source:scuttle.py
...26 logging.init()27 parser = CommandParser()28 scuttle_io = ScuttleIO()29 ScuttleIO.add_options_to_parser(parser)30 parser.add_global_option('--procs', '-p', destvar='procs', default=-1, type=int)31 parser.add_global_option('--version', destvar='version', action='store_true')32 parser.add_global_option('--help', '-h', '-?', destvar='help', action='store_true')33 add_subcommands_to_parser(parser)34 # If no arguments were specified, the user must want help. Don't even bother parsing35 if len(sys.argv) == 1:36 invoke_toplevel_help(parser)37 return38 global_args, command_list = parser.parse()39 # CommandParser returns None for global_args if the help submodule was invoked40 # In this case, we don't want to validate41 if global_args is None:42 for c in command_list:43 c.execute()44 return45 if global_args.help:46 invoke_toplevel_help(parser)...
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