How to use notTest method in ava

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test_basic.py

Source:test_basic.py Github

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1#!/usr/bin/env python2# -*- coding: utf-8 -*-3"""4test_standardpaths5----------------------------------6Tests for `standardpaths` module.7"""8import os9import pathlib10import platform11import sys12import unittest13from nose.plugins.skip import SkipTest14from nose.tools import nottest, eq_, assert_is_instance15from PyQt5.QtCore import qVersion, QCoreApplication, QStandardPaths16from standardpaths import (17 Location, configure, get_writable_path, get_standard_paths,18)19qt_version = tuple(int(c) for c in qVersion().split('.'))20def test_get_writable_path_string():21 eq_(get_writable_path('desktop'), get_writable_path(Location.desktop))22def nottest_unless(criteria):23 def _nottest_unless(f):24 if criteria:25 return f26 return nottest(f)27 return _nottest_unless28def nottest_if(criteria):29 def _nottest_if(f):30 if not criteria:31 return f32 return nottest(f)33 return _nottest_if34class EnumValuesMixin(object):35 @classmethod36 def setup_class(cls):37 cls.enum_values = set([v for v in Location])38 cls.app = QCoreApplication(sys.argv)39 cls.app.setApplicationName('Yksom')40 cls.app.setOrganizationName('uranusjr')41 configure(application_name='Yksom', organization_name='uranusjr')42 @classmethod43 def teardown_class(cls):44 # Make sure all locations are tested.45 eq_(cls.enum_values, set())46 def setUp(self):47 value_name = self._testMethodName.split('__')[-1]48 if value_name != 'data': # "data" is covered by "app_local_data"49 self.enum_values.remove(Location[value_name])50class GetWritablePathTests(EnumValuesMixin, unittest.TestCase):51 def _test_against_qt(self, location, qt_location):52 path = get_writable_path(location)53 assert_is_instance(path, pathlib.Path)54 eq_(path.as_posix(), QStandardPaths.writableLocation(qt_location))55 def test__desktop(self):56 self._test_against_qt(Location.desktop, QStandardPaths.DesktopLocation)57 def test__documents(self):58 self._test_against_qt(59 Location.documents, QStandardPaths.DocumentsLocation,60 )61 def test__fonts(self):62 self._test_against_qt(Location.fonts, QStandardPaths.FontsLocation)63 def test__applications(self):64 self._test_against_qt(65 Location.applications, QStandardPaths.ApplicationsLocation,66 )67 def test__music(self):68 self._test_against_qt(Location.music, QStandardPaths.MusicLocation)69 def test__movies(self):70 self._test_against_qt(Location.movies, QStandardPaths.MoviesLocation)71 def test__pictures(self):72 self._test_against_qt(73 Location.pictures, QStandardPaths.PicturesLocation,74 )75 def test__temp(self):76 self._test_against_qt(Location.temp, QStandardPaths.TempLocation)77 def test__home(self):78 self._test_against_qt(Location.home, QStandardPaths.HomeLocation)79 def test__data(self):80 self._test_against_qt(Location.data, QStandardPaths.DataLocation)81 def test__cache(self):82 self._test_against_qt(Location.cache, QStandardPaths.CacheLocation)83 def test__generic_data(self):84 self._test_against_qt(85 Location.generic_data, QStandardPaths.GenericDataLocation,86 )87 def test__runtime(self):88 self._test_against_qt(Location.runtime, QStandardPaths.RuntimeLocation)89 def test__config(self):90 self._test_against_qt(Location.config, QStandardPaths.ConfigLocation)91 def test__download(self):92 self._test_against_qt(93 Location.download, QStandardPaths.DownloadLocation,94 )95 def test__generic_cache(self):96 self._test_against_qt(97 Location.generic_cache, QStandardPaths.GenericCacheLocation,98 )99 def test__generic_config(self):100 self._test_against_qt(101 Location.generic_config, QStandardPaths.GenericConfigLocation,102 )103 def test__app_data(self):104 if qt_version < (5, 4, 1):105 raise SkipTest106 self._test_against_qt(107 Location.app_data, QStandardPaths.AppDataLocation,108 )109 def test__app_local_data(self):110 if qt_version < (5, 4, 1):111 raise SkipTest112 self._test_against_qt(113 Location.app_local_data, QStandardPaths.AppLocalDataLocation,114 )115 @nottest_unless(platform.system() == 'Darwin')116 def test_osx__log(self):117 eq_(get_writable_path(Location.log),118 pathlib.Path(os.path.expanduser('~/Library/Logs/uranusjr/Yksom')))119 @nottest_unless(platform.system() == 'Windows')120 def test_windows__log(self):121 eq_(get_writable_path(Location.log),122 get_writable_path(Location.app_local_data) / 'log')123 @nottest_if(platform.system() in ('Darwin', 'Windows',))124 def test_unix__log(self):125 eq_(get_writable_path(Location.log),126 get_writable_path(Location.cache) / 'log')127class GetStandardPathsTests(EnumValuesMixin, unittest.TestCase):128 def _test_against_qt(self, location, qt_location):129 paths = get_standard_paths(location)130 path_strs = []131 for path in paths:132 assert_is_instance(path, pathlib.Path)133 path_strs.append(path.as_posix())134 eq_(path_strs, QStandardPaths.standardLocations(qt_location))135 def test__desktop(self):136 self._test_against_qt(Location.desktop, QStandardPaths.DesktopLocation)137 def test__documents(self):138 self._test_against_qt(139 Location.documents, QStandardPaths.DocumentsLocation,140 )141 def test__fonts(self):142 self._test_against_qt(Location.fonts, QStandardPaths.FontsLocation)143 def test__applications(self):144 self._test_against_qt(145 Location.applications, QStandardPaths.ApplicationsLocation,146 )147 def test__music(self):148 self._test_against_qt(Location.music, QStandardPaths.MusicLocation)149 def test__movies(self):150 self._test_against_qt(Location.movies, QStandardPaths.MoviesLocation)151 def test__pictures(self):152 self._test_against_qt(153 Location.pictures, QStandardPaths.PicturesLocation,154 )155 def test__temp(self):156 self._test_against_qt(Location.temp, QStandardPaths.TempLocation)157 def test__home(self):158 self._test_against_qt(Location.home, QStandardPaths.HomeLocation)159 def test__data(self):160 paths = get_standard_paths(Location.data)161 path_strs = []162 for path in paths:163 assert_is_instance(path, pathlib.Path)164 path_strs.append(path.as_posix())165 qt_path_strs = QStandardPaths.standardLocations(166 QStandardPaths.DataLocation,167 )168 if platform.system() == 'Darwin':169 # Exclude bundle path on OS X. See comments in170 # `get_standard_paths` implementation for more information.171 if qt_path_strs[-1].rstrip('/').endswith('Python.app'):172 qt_path_strs = qt_path_strs[:-1]173 elif platform.system() == 'Windows':174 # Exclude paths relative to executable. See comments in175 # `get_standard_paths` implementation for more information.176 python_loc = (pathlib.Path(sys.executable) / '..').resolve()177 qt_path_strs = [178 ps for ps in qt_path_strs179 if ps not in (180 python_loc.as_posix(), (python_loc / 'data').as_posix(),181 )182 ]183 eq_(path_strs, qt_path_strs)184 def test__cache(self):185 self._test_against_qt(Location.cache, QStandardPaths.CacheLocation)186 def test__generic_data(self):187 self._test_against_qt(188 Location.generic_data, QStandardPaths.GenericDataLocation,189 )190 def test__runtime(self):191 self._test_against_qt(Location.runtime, QStandardPaths.RuntimeLocation)192 def test__config(self):193 paths = get_standard_paths(Location.config)194 path_strs = []195 for path in paths:196 assert_is_instance(path, pathlib.Path)197 path_strs.append(path.as_posix())198 qt_path_strs = QStandardPaths.standardLocations(199 QStandardPaths.ConfigLocation,200 )201 if platform.system() == 'Windows':202 # Exclude paths relative to executable. See comments in203 # `get_standard_paths` implementation for more information.204 python_loc = (pathlib.Path(sys.executable) / '..').resolve()205 qt_path_strs = [206 ps for ps in qt_path_strs207 if ps not in (208 python_loc.as_posix(), (python_loc / 'data').as_posix(),209 )210 ]211 eq_(path_strs, qt_path_strs)212 def test__download(self):213 self._test_against_qt(214 Location.download, QStandardPaths.DownloadLocation,215 )216 def test__generic_cache(self):217 self._test_against_qt(218 Location.generic_cache, QStandardPaths.GenericCacheLocation,219 )220 def test__generic_config(self):221 paths = get_standard_paths(Location.generic_config)222 path_strs = []223 for path in paths:224 assert_is_instance(path, pathlib.Path)225 path_strs.append(path.as_posix())226 qt_path_strs = QStandardPaths.standardLocations(227 QStandardPaths.GenericConfigLocation,228 )229 if platform.system() == 'Windows':230 # Exclude paths relative to executable. See comments in231 # `get_standard_paths` implementation for more information.232 python_loc = (pathlib.Path(sys.executable) / '..').resolve()233 qt_path_strs = [234 ps for ps in qt_path_strs235 if ps not in (236 python_loc.as_posix(), (python_loc / 'data').as_posix(),237 )238 ]239 eq_(path_strs, qt_path_strs)240 def test__app_data(self):241 if qt_version < (5, 4, 1):242 raise SkipTest243 paths = get_standard_paths(Location.app_data)244 path_strs = []245 for path in paths:246 assert_is_instance(path, pathlib.Path)247 path_strs.append(path.as_posix())248 qt_path_strs = QStandardPaths.standardLocations(249 QStandardPaths.AppDataLocation,250 )251 if platform.system() == 'Darwin':252 # Exclude bundle path on OS X. See comments in253 # `get_standard_paths` implementation for more information.254 if qt_path_strs[-1].rstrip('/').endswith('Python.app'):255 qt_path_strs = qt_path_strs[:-1]256 elif platform.system() == 'Windows':257 # Exclude paths relative to executable. See comments in258 # `get_standard_paths` implementation for more information.259 python_loc = (pathlib.Path(sys.executable) / '..').resolve()260 qt_path_strs = [261 ps for ps in qt_path_strs262 if ps not in (263 python_loc.as_posix(), (python_loc / 'data').as_posix(),264 )265 ]266 eq_(path_strs, qt_path_strs)267 def test__app_local_data(self):268 if qt_version < (5, 4, 1):269 raise SkipTest270 paths = get_standard_paths(Location.app_local_data)271 path_strs = []272 for path in paths:273 assert_is_instance(path, pathlib.Path)274 path_strs.append(path.as_posix())275 qt_path_strs = QStandardPaths.standardLocations(276 QStandardPaths.AppLocalDataLocation,277 )278 if platform.system() == 'Darwin':279 # Exclude bundle path on OS X. See comments in280 # `get_standard_paths` implementation for more information.281 if qt_path_strs[-1].rstrip('/').endswith('Python.app'):282 qt_path_strs = qt_path_strs[:-1]283 elif platform.system() == 'Windows':284 # Exclude paths relative to executable. See comments in285 # `get_standard_paths` implementation for more information.286 python_loc = (pathlib.Path(sys.executable) / '..').resolve()287 qt_path_strs = [288 ps for ps in qt_path_strs289 if ps not in (290 python_loc.as_posix(), (python_loc / 'data').as_posix(),291 )292 ]293 eq_(path_strs, qt_path_strs)294 @nottest_unless(platform.system() == 'Darwin')295 def test_osx__log(self):296 exp = pathlib.Path(os.path.expanduser('~/Library/Logs/uranusjr/Yksom'))297 eq_(get_standard_paths(Location.log), [exp])298 @nottest_unless(platform.system() == 'Windows')299 def test_windows__log(self):300 eq_(get_standard_paths(Location.log),301 [get_writable_path(Location.app_local_data) / 'log'])302 @nottest_if(platform.system() in ('Darwin', 'Windows',))303 def test_unix__log(self):304 eq_(get_standard_paths(Location.log),...

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CordTestServer.py

Source:CordTestServer.py Github

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1# Copyright 2017-present Open Networking Foundation2#3# Licensed under the Apache License, Version 2.0 (the "License");4# you may not use this file except in compliance with the License.5# You may obtain a copy of the License at6#7# http://www.apache.org/licenses/LICENSE-2.08#9# Unless required by applicable law or agreed to in writing, software10# distributed under the License is distributed on an "AS IS" BASIS,11# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.12# See the License for the specific language governing permissions and13# limitations under the License.14#15# Copyright 2016-present Ciena Corporation16#17# Licensed under the Apache License, Version 2.0 (the "License");18# you may not use this file except in compliance with the License.19# You may obtain a copy of the License at20#21# http://www.apache.org/licenses/LICENSE-2.022#23# Unless required by applicable law or agreed to in writing, software24# distributed under the License is distributed on an "AS IS" BASIS,25# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.26# See the License for the specific language governing permissions and27# limitations under the License.28#29from CordContainer import Container, Onos, OnosStopWrapper, OnosCord, OnosCordStopWrapper, Quagga, QuaggaStopWrapper, Radius, reinitContainerClients30from nose.tools import nottest31from SimpleXMLRPCServer import SimpleXMLRPCServer32from resource import getrlimit, RLIMIT_NOFILE33import daemon34import xmlrpclib35import os36import signal37import json38import time39import threading40##Server to handle container restart/stop requests from test container.41##Used now to restart ONOS from vrouter test container42CORD_TEST_HOST = '172.17.0.1'43CORD_TEST_PORT = 2500044class CordTestServer(object):45 onos_cord = None46 def __restart_onos(self, node = None, config = None, timeout = 10):47 if self.onos_cord:48 onos_config = '{}/network-cfg.json'.format(self.onos_cord.onos_config_dir)49 else:50 onos_config = '{}/network-cfg.json'.format(Onos.host_config_dir)51 if config is None:52 try:53 os.unlink(onos_config)54 except:55 pass56 print('Restarting ONOS')57 if self.onos_cord:58 self.onos_cord.start(restart = True, network_cfg = config)59 else:60 Onos.restart_node(node = node, network_cfg = config, timeout = timeout)61 return 'DONE'62 def restart_onos(self, kwargs):63 return self.__restart_onos(**kwargs)64 def __shutdown_onos(self, node = None):65 if node is None:66 node = Onos.NAME67 OnosStopWrapper(node)68 return 'DONE'69 def shutdown_onos(self, kwargs):70 return self.__shutdown_onos(**kwargs)71 def __restart_cluster(self, config = None, timeout = 10, setup = False):72 Onos.restart_cluster(network_cfg = config, timeout = timeout, setup = setup)73 return 'DONE'74 def restart_cluster(self, kwargs):75 return self.__restart_cluster(**kwargs)76 def __add_cluster_onos(self, count = 1, config = None):77 Onos.add_cluster(count = count, network_cfg = config)78 return 'DONE'79 def add_cluster_onos(self, kwargs):80 return self.__add_cluster_onos(**kwargs)81 def __restart_quagga(self, config = None, boot_delay = 30 ):82 config_file = Quagga.quagga_config_file83 if config is not None:84 quagga_config = '{}/testrib_gen.conf'.format(Quagga.host_quagga_config)85 config_file = '{}/testrib_gen.conf'.format(Quagga.guest_quagga_config)86 with open(quagga_config, 'w+') as fd:87 fd.write(str(config))88 print('Restarting QUAGGA with config file %s, delay %d' %(config_file, boot_delay))89 Quagga(prefix = Container.IMAGE_PREFIX, restart = True, config_file = config_file, boot_delay = boot_delay)90 return 'DONE'91 def restart_quagga(self, kwargs):92 return self.__restart_quagga(**kwargs)93 def stop_quagga(self):94 quaggaStop = QuaggaStopWrapper()95 time.sleep(5)96 try:97 quagga_config_gen = '{}/testrib_gen.conf'.format(Quagga.host_quagga_config)98 os.unlink(quagga_config_gen)99 except: pass100 return 'DONE'101 def __run_shell_quagga(self, cmd = None):102 ret = 0103 if cmd is not None:104 exec_cmd = 'docker exec {} {}'.format(Quagga.NAME, cmd)105 ret = os.system(exec_cmd)106 return ret107 def __run_shell(self, cmd = None):108 ret = 0109 if cmd is not None:110 ret = os.system(cmd)111 return ret112 def run_shell_quagga(self, kwargs):113 return self.__run_shell_quagga(**kwargs)114 def run_shell(self, kwargs):115 return self.__run_shell(**kwargs)116 def restart_radius(self):117 print('Restarting RADIUS Server')118 Radius(prefix = Container.IMAGE_PREFIX, restart = True)119 return 'DONE'120 def shutdown(self):121 print('Shutting down cord test server')122 os.kill(0, signal.SIGKILL)123 return 'DONE'124def find_files_by_path(*paths):125 wanted = []126 for p in paths:127 try:128 fd = os.open(p, os.O_RDONLY)129 wanted.append(os.fstat(fd)[1:3])130 finally:131 os.close(fd)132 def fd_wanted(fd):133 try:134 return os.fstat(fd)[1:3] in wanted135 except OSError:136 return False137 max_fd = getrlimit(RLIMIT_NOFILE)[1]138 return [ fd for fd in xrange(max_fd) if fd_wanted(fd) ]139@nottest140def cord_test_server_start(daemonize = True,141 cord_test_host = CORD_TEST_HOST,142 cord_test_port = CORD_TEST_PORT,143 onos_cord = None,144 foreground=False):145 server = SimpleXMLRPCServer( (cord_test_host, cord_test_port) )146 server.register_instance(CordTestServer())147 CordTestServer.onos_cord = onos_cord148 if daemonize is True:149 ##before daemonizing, preserve urandom needed by paramiko150 preserve_list = find_files_by_path('/dev/urandom')151 preserve_list.append(server)152 d = daemon.DaemonContext(files_preserve = preserve_list,153 detach_process = True)154 with d:155 reinitContainerClients()156 server.serve_forever()157 else:158 if foreground:159 try:160 server.serve_forever()161 except KeyboardInterrupt:162 return server163 else:164 task = threading.Thread(target = server.serve_forever)165 ##terminate when main thread exits166 task.daemon = True167 task.start()168 return server169@nottest170def cord_test_server_stop(server):171 server.shutdown()172 server.server_close()173@nottest174def get_cord_test_loc():175 host = os.getenv('CORD_TEST_HOST', CORD_TEST_HOST)176 port = int(os.getenv('CORD_TEST_PORT', CORD_TEST_PORT))177 return host, port178def rpc_server_instance():179 '''Stateless'''180 host, port = get_cord_test_loc()181 rpc_server = 'http://{}:{}'.format(host, port)182 return xmlrpclib.Server(rpc_server, allow_none = True)183@nottest184def __cord_test_onos_restart(**kwargs):185 return rpc_server_instance().restart_onos(kwargs)186@nottest187def cord_test_onos_restart(node = None, config = None, timeout = 10):188 '''Send ONOS restart to server'''189 for i in range(3):190 try:191 data = __cord_test_onos_restart(node = node, config = config, timeout = timeout)192 if data == 'DONE':193 return True194 except:195 time.sleep(2)196 return False197@nottest198def __cord_test_onos_shutdown(**kwargs):199 return rpc_server_instance().shutdown_onos(kwargs)200@nottest201def cord_test_onos_shutdown(node = None):202 data = __cord_test_onos_shutdown(node = node)203 if data == 'DONE':204 return True205 return False206@nottest207def __cord_test_restart_cluster(**kwargs):208 return rpc_server_instance().restart_cluster(kwargs)209@nottest210def cord_test_restart_cluster(config = None, timeout = 10, setup = False):211 for i in range(3):212 try:213 data = __cord_test_restart_cluster(config = config, timeout = timeout, setup = setup)214 if data == 'DONE':215 return True216 except:217 time.sleep(2)218 return False219@nottest220def __cord_test_onos_add_cluster(**kwargs):221 return rpc_server_instance().add_cluster_onos(kwargs)222@nottest223def cord_test_onos_add_cluster(count = 1, config = None):224 data = __cord_test_onos_add_cluster(count = count, config = config)225 if data == 'DONE':226 return True227 return False228@nottest229def __cord_test_quagga_restart(**kwargs):230 return rpc_server_instance().restart_quagga(kwargs)231@nottest232def cord_test_quagga_restart(config = None, boot_delay = 30):233 '''Send QUAGGA restart to server'''234 data = __cord_test_quagga_restart(config = config, boot_delay = boot_delay)235 if data == 'DONE':236 return True237 return False238@nottest239def __cord_test_quagga_shell(**kwargs):240 return rpc_server_instance().run_shell_quagga(kwargs)241@nottest242def cord_test_quagga_shell(cmd = None):243 '''Send QUAGGA shell cmd to server'''244 return __cord_test_quagga_shell(cmd = cmd)245@nottest246def __cord_test_shell(**kwargs):247 return rpc_server_instance().run_shell(kwargs)248@nottest249def cord_test_shell(cmd = None):250 '''Send shell cmd to run remotely'''251 return __cord_test_shell(cmd = cmd)252@nottest253def cord_test_quagga_stop():254 data = rpc_server_instance().stop_quagga()255 if data == 'DONE':256 return True257 return False258@nottest259def cord_test_radius_restart():260 '''Send Radius server restart to server'''261 data = rpc_server_instance().restart_radius()262 if data == 'DONE':263 return True264 return False265@nottest266def cord_test_server_shutdown(host, port):267 '''Shutdown the cord test server'''268 rpc_server = 'http://{}:{}'.format(host, port)269 try:270 xmlrpclib.Server(rpc_server, allow_none = True).shutdown()271 except: pass...

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test_standard_stats.py

Source:test_standard_stats.py Github

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1"""2Currently just running and making sure there's no uncaught exceptions.3TODO: check that the correct output is generated too4In future we should put this in a web-accessible place5Usage: pytest test_standard_stats.py6"""7import tempfile8import pytest9import toml10from pathlib import Path11from lama.tests import (wt_registration_dir, mut_registration_dir, target_dir,12 stats_output_dir)13from lama.stats.standard_stats import lama_stats_new14root_config = dict(15 stats_types=[16 'organ_volumes',17 'intensity',18 'jacobians'19 ],20 normalise_organ_vol_to_mask=True,21 use_log_jacobians = True,22 reg_folder='similarity',23 jac_folder='similarity',24 mask='mask_tight.nrrd',25 label_info='label_info.csv',26 label_map='labels.nrrd',27 blur_fwhm=100,28 voxel_size=14.0,29 invert_stats=True,30 normalise='mask',31 use_staging=True,32 memmap=True33)34@pytest.fixture()35def get_config() -> Path:36 """37 Fixture to get stats config and to write it to temporary file38 Returns39 -------40 location of stats config temporary file41 """42 def make_config(config_updates={}):43 # Create a nested function to allow the fixture to take arguments44 c = root_config.copy()45 c.update(config_updates)46 with tempfile.NamedTemporaryFile(mode='w+', delete=False, suffix='.toml') as fh:47 fh.write(toml.dumps(c))48 return c, fh.name49 return make_config50def test_all(get_config):51 """52 Run the stats module. The data required for this to work must be initially made53 by running the test: tests/test_data_generation.py54 """55 config, config_file = get_config()56 lama_stats_new.run(config_file, wt_registration_dir, mut_registration_dir, stats_output_dir, target_dir)57@pytest.mark.skip58def test_no_mask(get_config):59 config, config_file = get_config({'mask': None})60 # Should get value errors if mask not specified61 # with pytest.raises(ValueError):62 # lama_stats_new.run(config_file, wt_registration_dir, mut_registration_dir, stats_output_dir, target_dir)63# # @nottest64# # def test_no_use():65# # """66# # For the organ volume test, if the meta data dataframe has a column of 'no_analysis', do not include the label in the67# # analysis68# # """69# # pass70#71# @nottest72# def test_mutant_id_subset():73# """74# Thest whether specifying mutant id subset works75# """76#77# config = stats_config_dir / 'new_stats_config_test_mutant_id_subset.toml'78# lama_stats_new.run(config, wt_registration_dir, mut_registration_dir, stats_output_dir, target_dir)79#80# @nottest81# def test_specifiy_line():82# """83# Run the stats module. The data requirted for this to work must be initially made84# by running the test: tests/test_lama.py:test_lama_job_runner()85# """86# line = 'mutant_1' # Only run this line87#88# # Remove any previous output89# if stats_output_dir.is_dir():90# shutil.rmtree(stats_output_dir)91#92# config = stats_config_dir / 'new_stats_config.toml'93# lama_stats_new.run(config, wt_registration_dir, mut_registration_dir, stats_output_dir, target_dir, lines_to_process=[line])94#95# output_lines = [x.name for x in stats_output_dir.iterdir() if x.is_dir()]96# assert_equal([line], output_lines)97#98#99# @nottest100# def test_erroneuos_configs():101# error_config_dir = stats_config_dir / 'erroneous_configs'102#103# for config in error_config_dir.iterdir():104# lama_stats_new.run(config, wt_registration_dir, mut_registration_dir, stats_output_dir, target_dir)105#106# # @nottest107# # def test_organ_vols():108# # config = join(CONFIG_DIR, 'organ_vols.yaml')109# # run_lama_stats.run(config)110# #111# # @nottest112# # def test_glcm():113# # config = join(CONFIG_DIR, 'test_glcm.yaml')114# # run_lama_stats.run(config)115# #116# # @nottest117# # def test_from_arbitrary_directory():118# # config = join(CONFIG_DIR, 'all_specimens.yaml')119# # os.chdir(os.path.expanduser('~'))120# # run_lama_stats.run(config)121# #122# # @nottest123# # def test_missing_config():124# # config = join(CONFIG_DIR, 'all_specimens.flaml')125# # assert_raises(Exception, run_lama_stats.run, config)126# #127# # @nottest128# # def test_misc():129# # config = join(CONFIG_DIR, 'misc_test.yaml')130# # run_lama_stats.run(config)131# #132# #133# # @nottest134# # def test_incorrect_staging_file():135# # pass136#...

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test_lama_stats.py

Source:test_lama_stats.py Github

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1"""2Currently just running and making sure there's no uncaught exceptions.3TODO: check that the correct output is generated too4To run these tests, the test data needs to be fechted from bit/dev/lama_stats_test_data5In future we should put this in a web-accessible place6Usage: pytest -v -m "not notest"7"""8import shutil9import tempfile10from nose.tools import nottest, assert_equal11import toml12# import paths from the __init__13from . import (stats_config_dir, wt_registration_dir, mut_registration_dir, target_dir,14 stats_output_dir)15from lama.stats.standard_stats import lama_stats_new16root_config = dict(17 stats_types=[18 'organ_volumes'19 # 'intensity',20 # 'jacobians'21 ],22 reg_folder='similarity',23 jac_folder='similarity',24 mask='mask_tight.nrrd',25 label_info='label_info.csv',26 label_map='labels.nrrd',27 blur_fwhm=100,28 voxel_size=14.0,29 invert_stats=True,30 normalise='mask',31 use_staging=False,32)33# @nottest34def test_all():35 """36 Run the stats module. The data requirted for this to work must be initially made37 by running the test: tests/test_lama.py:test_lama_job_runner()38 """39 with tempfile.NamedTemporaryFile(mode='w+', delete=False) as fh:40 # print(fh.name)41 fh.write(toml.dumps(root_config))42 lama_stats_new.run(fh.name, wt_registration_dir, mut_registration_dir, stats_output_dir, target_dir)43# @nottest44# def test_no_use():45# """46# For the organ volume test, if the meta data dataframe has a column of 'no_analysis', do not include the label in the47# analysis48# """49# pass50@nottest51def test_mutant_id_subset():52 """53 Thest whether specifying mutant id subset works54 """55 config = stats_config_dir / 'new_stats_config_test_mutant_id_subset.toml'56 lama_stats_new.run(config, wt_registration_dir, mut_registration_dir, stats_output_dir, target_dir)57@nottest58def test_specifiy_line():59 """60 Run the stats module. The data requirted for this to work must be initially made61 by running the test: tests/test_lama.py:test_lama_job_runner()62 """63 line = 'mutant_1' # Only run this line64 # Remove any previous output65 if stats_output_dir.is_dir():66 shutil.rmtree(stats_output_dir)67 config = stats_config_dir / 'new_stats_config.toml'68 lama_stats_new.run(config, wt_registration_dir, mut_registration_dir, stats_output_dir, target_dir, lines_to_process=[line])69 output_lines = [x.name for x in stats_output_dir.iterdir() if x.is_dir()]70 assert_equal([line], output_lines)71@nottest72def test_erroneuos_configs():73 error_config_dir = stats_config_dir / 'erroneous_configs'74 for config in error_config_dir.iterdir():75 lama_stats_new.run(config, wt_registration_dir, mut_registration_dir, stats_output_dir, target_dir)76# @nottest77# def test_organ_vols():78# config = join(CONFIG_DIR, 'organ_vols.yaml')79# run_lama_stats.run(config)80#81# @nottest82# def test_glcm():83# config = join(CONFIG_DIR, 'test_glcm.yaml')84# run_lama_stats.run(config)85#86# @nottest87# def test_from_arbitrary_directory():88# config = join(CONFIG_DIR, 'all_specimens.yaml')89# os.chdir(os.path.expanduser('~'))90# run_lama_stats.run(config)91#92# @nottest93# def test_missing_config():94# config = join(CONFIG_DIR, 'all_specimens.flaml')95# assert_raises(Exception, run_lama_stats.run, config)96#97# @nottest98# def test_misc():99# config = join(CONFIG_DIR, 'misc_test.yaml')100# run_lama_stats.run(config)101#102#103# @nottest104# def test_incorrect_staging_file():105# pass106if __name__ == '__main__':...

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test_helper_functions.py

Source:test_helper_functions.py Github

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1import os2import logging3import psycopg24import psycopg2.extras as psycop_extras5from nose.tools import nottest6from application.services import config_service7from application.services import logging_service8from application.services import debug_service9from application.services import conversion_service10from application.services import database_service11from application.models.classes import dycast_parameters12debug_service.enable_debugger()13current_dir = os.path.basename(os.path.dirname(os.path.realpath(__file__)))14@nottest15def init_test_environment():16 config_path = os.path.join(current_dir, '..', 'dycast.config')17 config_service.init_config(config_path)18 logging_service.init_logging()19@nottest20def get_dycast_parameters():21 dycast = dycast_parameters.DycastParameters()22 dycast.srid_of_cases = '3857'23 dycast.files_to_import = get_test_cases_import_files_latlong()24 dycast.spatial_domain = 60025 dycast.temporal_domain = 2826 dycast.close_in_space = 10027 dycast.close_in_time = 428 dycast.case_threshold = 1029 dycast.startdate = conversion_service.get_date_object_from_string('2016-03-30')30 dycast.enddate = conversion_service.get_date_object_from_string('2016-03-31')31 dycast.extent_min_x = 183040032 dycast.extent_min_y = 212060033 dycast.extent_max_x = 183070034 dycast.extent_max_y = 212030035 dycast.srid_of_extent = 385736 return dycast 37@nottest38def get_test_data_directory():39 return os.path.join(current_dir, 'test_data')40@nottest41def get_test_data_import_directory():42 return os.path.join(get_test_data_directory(), 'import')43@nottest44def get_test_data_export_directory():45 return os.path.join(get_test_data_directory(), 'export')46@nottest47def get_test_cases_import_files_latlong():48 file_1 = os.path.join(get_test_data_import_directory(), 'input_cases_latlong1.tsv')49 file_2 = os.path.join(get_test_data_import_directory(), 'input_cases_latlong2.tsv')50 return [file_1, file_2]51@nottest52def get_test_cases_import_file_geometry():53 return os.path.join(get_test_data_import_directory(), 'input_cases_geometry.tsv')54@nottest55def get_count_from_table(table_name):56 cur, conn = database_service.init_db()57 querystring = "SELECT count(*) from " + table_name58 try:59 cur.execute(querystring)60 except Exception:61 conn.rollback()62 logging.exception("Can't select count from table, exiting...")63 raise64 new_row = cur.fetchone()65 return new_row[0]66@nottest67def insert_test_risk():68 cur, conn = database_service.init_db()69 querystring = "INSERT INTO risk VALUES %s"70 data_tuple = [('2016-03-30', 1830400, 2120400, 10, 1, 6, 7, 0.3946), ('2016-03-31', 1830400, 2120400, 10, 1, 6, 7, 0.3946)]71 try:72 psycop_extras.execute_values(cur, querystring, data_tuple)73 except psycopg2.IntegrityError:74 conn.rollback()75 logging.warning("Couldn't insert duplicate key in tuple: %s...", data_tuple) 76 except Exception:77 conn.rollback()78 logging.exception("Couldn't insert tuple")79 raise...

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tests.py

Source:tests.py Github

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1from master import *2from nose.tools import nottest3#######################################################################################4@nottest5def walk(folder):6 data = []7 for root, dirs, files in os.walk(folder):8 del dirs[:] # walk down only one level9 path = root.split('/')10 for file in files:11 if file[-3:] == ".py":12 data.append(folder.replace("backdoors/", "") + "/" + str(file).replace(".py", ""))13 return data14@nottest15def get_backdoors_list():16 bds = []17 bds += walk("backdoors/access")18 bds += walk("backdoors/escalation")19 bds += walk("backdoors/windows")20 bds += walk("backdoors/shell")21 bds += walk("backdoors/auxiliary")22 return bds23@nottest24def get_backdoors():25 objs = []26 args = get_backdoors_list();27 for s in args:28 bd = s.split()[0]29 loc, bd = bd.rsplit("/", 1)30 if "backdoors/" + loc not in sys.path: 31 sys.path.insert(0, "backdoors/" + loc)32 mod = importlib.import_module(bd)33 clsmembers = inspect.getmembers(sys.modules[bd], inspect.isclass)34 objs.append([m for m in clsmembers if m[1].__module__ == bd][0][1])35 objs = [o for o in objs if o.__name__ != "Option"]36 return objs37@nottest38def get_modules():39 bd = BackdoorMe()40 return bd.enabled_modules.keys()41@nottest42def check_add_module_test(bd, m):43 core = BackdoorMe()44 bd = bd(core)45 if bd.allow_modules:46 bd.do_add(m)47 bd.do_show("options")48 pass49@nottest50def check_crash_test(bd):51 core = BackdoorMe()52 bd(core).do_show("options")53 pass54@nottest55def check_help_text(bd):56 core = BackdoorMe()57 if bd(core).help_text == "":58 assert False59#######################################################################################60def backdoor_crash_test():61 bds = get_backdoors()62 for bd in bds:63 yield check_crash_test, bd64def add_module_test():65 bds = get_backdoors()66 for bd in bds:67 for m in get_modules():68 yield check_add_module_test, bd, m69def help_text_test():70 bds = get_backdoors()71 for bd in bds:72 yield check_help_text, bd 73def add_target_test():74 bd = BackdoorMe()75 bd.addtarget("10.1.0.2", "student", "target123")76 ...

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test_dev_skip_test.py

Source:test_dev_skip_test.py Github

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1from dev_skip_test import istest, nottest, dev_skip_test2d = {}3@istest4def test_passes():5 d['istest'] = True6 assert True7@nottest8def test_fails():9 d['nottest'] = True10 assert False11def test_dev_skip_test():12 assert dev_skip_test is istest or dev_skip_test is nottest13 assert d.get('istest', False) is True...

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notTest.py

Source:notTest.py Github

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1def notTest(num):2 if num != 0 and num != 3:3 print("yes")4 else:5 print("no")6if __name__ == '__main__':7 notTest(1)8 notTest(2)9 notTest(0)...

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Using AI Code Generation

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1var available = require('./available');2available.notTest();3var test = function() {4 console.log('test');5};6var notTest = function() {7 console.log('notTest');8};9module.exports.test = test;10module.exports.notTest = notTest;11var available = require('./available');12available.notTest();13I'm not sure if this is the right place to post this, but I'm having trouble importing a module. I have a file called "test.js" which imports a module called "test-module" and tries to call a function from it. The test-module is in the same directory as test.js. The code for the module is: var test = function() { console.log("test"); } module.exports = test; The code for test.js is: var test = require("./test-module"); test(); When I run test.js, I get the following error: module.js:338 throw err; ^ Error: Cannot find module './test-module' at Function.Module._resolveFilename (module.js:336:15) at Function.Module._load (module.js:278:25) at Module.require (module.js:365:17) at require (module.js:384:17) at Object. (/Users

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Using AI Code Generation

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1availableModule.notTest();2module.exports = {3 test: function() {4 console.log('test');5 },6 notTest: function() {7 console.log('not test');8 }9}

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Using AI Code Generation

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1var available = require('./available');2available.notTest();3module.exports = {4 notTest: function() {5 console.log('not a test');6 }7}

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Using AI Code Generation

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1var available = require('available');2var result = available.notTest();3console.log(result);4exports.notTest = function() {5 return 'notTest';6};7var available = require('available');8var result = available.test();9console.log(result);10exports.test = function() {11 return 'test';12};13var available = require('available');14var result = available.notTest();15console.log(result);16exports.notTest = function() {17 return 'notTest';18};19var available = require(require.resolve('available'));20var result = available.test();21console.log(result);22exports.test = function() {23 return 'test';24};

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Using AI Code Generation

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1var availableTest = require('./availableTest');2availableTest.notTest(availableTest.test);3module.exports = {4 test: function(){5 console.log('test');6 },7 notTest: function(callback){8 callback();9 }10}

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Using AI Code Generation

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1var available = require('./available');2available.notTest();3console.log(available.test);4module.exports = {5 notTest: function() {6 console.log('Not Hello World!');7 }8}

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Using AI Code Generation

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1var availableObjects = require('./availableObjects.js');2var test = function(){3 availableObjects.notTest();4}5module.exports.test = test;6var notTest = function(){7 console.log('I am not a test');8}9module.exports.notTest = notTest;

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Using AI Code Generation

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1var available = require('./available.js');2console.log(available.notTest('hello'));3exports.notTest = function (str) {4 return str + 'world';5};6module.exports = {7 notTest: function (str) {8 return str + 'world';9 }10};11var available = {12 notTest: function (str) {13 return str + 'world';14 }15};16module.exports = available;17var available = function () {18 return {19 notTest: function (str) {20 return str + 'world';21 }22 }23};24module.exports = available();

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